PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_24_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GRAS
Protein Properties Length: 378aa    MW: 42307.6 Da    PI: 7.9785
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_24_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS445.24.5e-13693782374
                               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknssee 77 
                                        ++ L+ cA+a+++g+ ++a+++++ l++ +s +gdp +R+aay++eALaar+a s+++lykal+++e +   s ++
  cra_locus_24_iso_1_len_1370_ver_3   9 KQMLFGCATAIQEGNISEASTMINMLRQKVSIQGDPSERIAAYMVEALAARMAISGKGLYKALKCKEPP---SYDR 81 
                                        689*****************************************************************9...9*** PP

                               GRAS  78 laalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg 153
                                        laa+++++ev+P+++f++++aN aIlea++ge+rvHi+Dfdi+qG Q+ +Llq+La  p +p +lR+Tgv++pes+
  cra_locus_24_iso_1_len_1370_ver_3  82 LAAMQVLFEVCPCFRFGFMAANGAILEAFKGEKRVHIVDFDINQGSQYYTLLQTLARLPYKPTHLRLTGVDDPESV 157
                                        **************************************************************************99 PP

                               GRAS 154 ..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdev 227
                                              l+++g+rL+ +A  l++pfef + va +++d+++ +L +kpg+al+Vn+++qlh+++desvs+ ++rd++
  cra_locus_24_iso_1_len_1370_ver_3 158 qrAVGGLKNIGQRLETLAGDLEIPFEFCA-VAAKTADVTPAMLGCKPGDALIVNFAFQLHHMPDESVSTVNQRDRL 232
                                        878889***********************.7999****************************************** PP

                               GRAS 228 LklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacega 303
                                        L++vksl+Pk+v+vveq++++n+++Fl rf+ea +yysa+fdsl+a+l+r+s+er++vEr++l+r+i n++aceg+
  cra_locus_24_iso_1_len_1370_ver_3 233 LRMVKSLNPKLVTVVEQDVNTNTAPFLPRFAEAYSYYSAVFDSLDATLSRDSQERMNVERQCLARDIINIIACEGE 308
                                        **************************************************************************** PP

                               GRAS 304 errerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                        +r+er e ++kWr+r+++aGF++ p+s+++ ++++ l+++++++ y+v+ee g l +gW+++ L+++SaWr
  cra_locus_24_iso_1_len_1370_ver_3 309 DRIERYEVAGKWRARMMMAGFSSSPISQSVKDEIRKLIKQYSER-YKVKEETGGLHFGWEEKILIVASAWR 378
                                        ******************************************66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.9791359IPR005202Transcription factor GRAS
PfamPF035141.5E-1339378IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
XMTAPRTAKQ MLFGCATAIQ EGNISEASTM INMLRQKVSI QGDPSERIAA YMVEALAARM  60
AISGKGLYKA LKCKEPPSYD RLAAMQVLFE VCPCFRFGFM AANGAILEAF KGEKRVHIVD  120
FDINQGSQYY TLLQTLARLP YKPTHLRLTG VDDPESVQRA VGGLKNIGQR LETLAGDLEI  180
PFEFCAVAAK TADVTPAMLG CKPGDALIVN FAFQLHHMPD ESVSTVNQRD RLLRMVKSLN  240
PKLVTVVEQD VNTNTAPFLP RFAEAYSYYS AVFDSLDATL SRDSQERMNV ERQCLARDII  300
NIIACEGEDR IERYEVAGKW RARMMMAGFS SSPISQSVKD EIRKLIKQYS ERYKVKEETG  360
GLHFGWEEKI LIVASAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-651537726378Protein SCARECROW
5b3h_A4e-651537725377Protein SCARECROW
5b3h_D4e-651537725377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027091450.10.0scarecrow-like protein 1
RefseqXP_027091451.10.0scarecrow-like protein 1
RefseqXP_027091452.10.0scarecrow-like protein 1
RefseqXP_027091453.10.0scarecrow-like protein 1
RefseqXP_027091454.10.0scarecrow-like protein 1
RefseqXP_027091455.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A068UU850.0A0A068UU85_COFCA; Uncharacterized protein
STRINGXP_009766061.10.0(Nicotiana sylvestris)
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]