PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_24719_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | WRKY | ||||||||
Protein Properties | Length: 174aa MW: 19573.3 Da PI: 4.9394 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 42.5 | 1.3e-13 | 2 | 49 | 15 | 59 |
-TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 15 vkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 + ++++pr+Y+rCt++ +C+++k+v+ +e+p + +tY+g+H+++ cra_locus_24719_iso_1_len_551_ver_3 2 ILNADYPRNYFRCTHKfdqECQATKQVQMIQENPPLYRTTYHGHHTCR 49 66889**********9999***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00774 | 8.7E-16 | 1 | 50 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 10.613 | 1 | 46 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.8E-13 | 2 | 49 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-13 | 2 | 49 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.4E-13 | 2 | 49 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
XILNADYPRN YFRCTHKFDQ ECQATKQVQM IQENPPLYRT TYHGHHTCRN LHKAPQIILD 60 STTSNDSSSV LLSFNHQSNE TTAFPLVGKQ ETKDEEEVHQ IQRGFFPNQF SDYFLLPPPP 120 PASADLTGAM SSPLSAGSDH GGVYSCTAST HTLEMDHMVV GSVDDFDDVL QFEF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 3e-13 | 2 | 49 | 22 | 69 | OsWRKY45 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028094837.1 | 4e-43 | probable WRKY transcription factor 70 | ||||
TrEMBL | A0A2R6RRW9 | 6e-45 | A0A2R6RRW9_ACTCH; WRKY transcription factor 70 | ||||
STRING | POPTR_0016s14490.1 | 5e-38 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4230 | 21 | 43 |