PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_2466_iso_8

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

G2-like

Protein Properties

Length: 281aa MW: 30305.7 Da PI: 6.6676

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_2466_iso_8	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	71.2	1.5e-22	57	97	15	55
G2-like 15 veaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 v+av+qLGG+ kAtPk+i+++m+vkgLtl h+kSHLQkYRl cra_locus_2466_iso_8_len_1781_ver_3 57 VDAVTQLGGPSKATPKAIMRTMGVKGLTLFHLKSHLQKYRL 97 9***************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.38E-7	57	98	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-14	57	97	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	1.2E-19	57	98	IPR009057	Homeodomain-like
Pfam	PF14379	2.0E-14	127	172	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MQMLPRLIQP REAIIAQEDI HNLHTSAAAG IVDPCLVLTS DPSLASAGLR TFTXXXVDAV 60 TQLGGPSKAT PKAIMRTMGV KGLTLFHLKS HLQKYRLGLA ASHLIESPCA SNSAQSLQTS 120 DINEGYEVKE ALRAQMEVQS KLHLQVEAEK HLHIRQDAEQ KYMVMLERAC KMLVEQMVGC 180 AITNSDGEDY HQVIGRKTST SGTSPIACGL DPSESNDIVR VQGSQEYITR INPQGADCST 240 ESCLTSHDST AGATLDGSLP GGEGKKRILS RNSASPSIIW S

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027086327.1	1e-109	protein PHR1-LIKE 3-like isoform X2
Refseq	XP_027185319.1	1e-109	protein PHR1-LIKE 3-like isoform X2
TrEMBL	A0A068U7M8	1e-104	A0A068U7M8_COFCA; Uncharacterized protein
STRING	EMJ12877	8e-99	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9764	20	27