PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_2466_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | G2-like | ||||||||
Protein Properties | Length: 276aa MW: 30018.8 Da PI: 7.2363 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 86.2 | 3.1e-27 | 2 | 49 | 4 | 51 |
G2-like 4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 lrWt +LH+rFv+av+qLGG+ kAtPk+i+++m+vkgLtl h+kSHLQ cra_locus_2466_iso_4_len_1504_ver_3 2 LRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMGVKGLTLFHLKSHLQ 49 79********************************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.462 | 1 | 56 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-24 | 2 | 49 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.3E-20 | 2 | 53 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 6.63E-12 | 2 | 52 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.5E-6 | 3 | 49 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.0E-14 | 122 | 167 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
XLRWTADLHD RFVDAVTQLG GPSKATPKAI MRTMGVKGLT LFHLKSHLQV CFSVRLKLIS 60 LVSGSFDRDL LLLQKYRLGK QSGKDLGEAS KDGLAASHLI ESPCASNSAQ SLQTSDINEG 120 YEVKEALRAQ MEVQSKLHLQ VEAEKHLHIR QDAEQKYMVM LERACKMLVE QMVGCAITNS 180 DGEDYHQVIG RKTSTSGTSP IACGLDPSES NDIVRVQGSQ EYITRINPQG ADCSTESCLT 240 SHDSTAGATL DGSLPGGEGK KRILSRNSAS PSIIWS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-14 | 2 | 57 | 5 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-14 | 2 | 57 | 5 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 3e-14 | 2 | 49 | 4 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-14 | 2 | 49 | 4 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-14 | 2 | 49 | 4 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-14 | 2 | 49 | 4 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-14 | 2 | 57 | 5 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-14 | 2 | 57 | 5 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-14 | 2 | 57 | 5 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-14 | 2 | 57 | 5 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-14 | 2 | 57 | 5 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-14 | 2 | 57 | 5 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027086326.1 | 1e-111 | protein PHR1-LIKE 3-like isoform X1 | ||||
Refseq | XP_027185318.1 | 1e-111 | protein PHR1-LIKE 3-like isoform X1 | ||||
TrEMBL | A0A068U7M8 | 1e-109 | A0A068U7M8_COFCA; Uncharacterized protein | ||||
STRING | XP_004293427.1 | 1e-106 | (Fragaria vesca) |