PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_2466_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

G2-like

Protein Properties

Length: 243aa MW: 26586.8 Da PI: 6.7835

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_2466_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.2	5.7e-31	2	53	4	55
G2-like 4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 lrWt +LH+rFv+av+qLGG+ kAtPk+i+++m+vkgLtl h+kSHLQkYRl cra_locus_2466_iso_3_len_1404_ver_3 2 LRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMGVKGLTLFHLKSHLQKYRL 53 79*************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.792	1	56	IPR017930	Myb domain
TIGRFAMs	TIGR01557	1.9E-22	2	53	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.31E-14	2	54	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.3E-28	2	54	IPR009057	Homeodomain-like
Pfam	PF00249	2.1E-7	3	52	IPR001005	SANT/Myb domain
Pfam	PF14379	1.6E-14	89	134	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
XLRWTADLHD RFVDAVTQLG GPSKATPKAI MRTMGVKGLT LFHLKSHLQK YRLGLAASHL 60 IESPCASNSA QSLQTSDINE DEILFRGYEV KEALRAQMEV QSKLHLQVEA EKHLHIRQDA 120 EQKYMVMLER ACKMLVEQMV GCAITNSDGE DYHQVIGRKT STSGTSPIAC GLDPSESNDI 180 VRVQGSQEYI TRINPQGADC STESCLTSHD STAGATLDGS LPGGEGKKRI LSRNSASPSI 240 IWS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-16	2	52	5	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-16	2	52	5	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-16	2	52	4	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-16	2	52	4	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-16	2	52	4	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-16	2	52	4	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-16	2	52	5	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-16	2	52	5	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-16	2	52	5	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-16	2	52	5	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-16	2	52	5	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-16	2	52	5	55	Protein PHOSPHATE STARVATION RESPONSE 1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027086327.1	1e-105	protein PHR1-LIKE 3-like isoform X2
Refseq	XP_027185319.1	1e-105	protein PHR1-LIKE 3-like isoform X2
TrEMBL	A0A068U7M8	1e-100	A0A068U7M8_COFCA; Uncharacterized protein
TrEMBL	A0A1U8GT66	1e-100	A0A1U8GT66_CAPAN; uncharacterized protein LOC107870086 isoform X2
STRING	XP_004293427.1	9e-98	(Fragaria vesca)