PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_2466_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

G2-like

Protein Properties

Length: 237aa MW: 25812.9 Da PI: 6.9946

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_2466_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.3	5.4e-31	2	53	4	55
G2-like 4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 lrWt +LH+rFv+av+qLGG+ kAtPk+i+++m+vkgLtl h+kSHLQkYRl cra_locus_2466_iso_2_len_1162_ver_3 2 LRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMGVKGLTLFHLKSHLQKYRL 53 79*************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.792	1	56	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.1E-28	2	54	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.24E-14	2	54	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.8E-22	2	53	IPR006447	Myb domain, plants
Pfam	PF00249	2.0E-7	3	52	IPR001005	SANT/Myb domain
Pfam	PF14379	1.6E-14	83	128	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
XLRWTADLHD RFVDAVTQLG GPSKATPKAI MRTMGVKGLT LFHLKSHLQK YRLGLAASHL 60 IESPCASNSA QSLQTSDINE GYEVKEALRA QMEVQSKLHL QVEAEKHLHI RQDAEQKYMV 120 MLERACKMLV EQMVGCAITN SDGEDYHQVI GRKTSTSGTS PIACGLDPSE SNDIVRVQGS 180 QEYITRINPQ GADCSTESCL TSHDSTAGAT LDGSLPGGEG KKRILSRNSA SPSIIWS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-16	2	52	4	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-16	2	52	4	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-16	2	52	4	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-16	2	52	4	54	Protein PHOSPHATE STARVATION RESPONSE 1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027086327.1	1e-108	protein PHR1-LIKE 3-like isoform X2
Refseq	XP_027185319.1	1e-108	protein PHR1-LIKE 3-like isoform X2
TrEMBL	A0A1U8GT66	1e-102	A0A1U8GT66_CAPAN; uncharacterized protein LOC107870086 isoform X2
STRING	XP_004293427.1	1e-100	(Fragaria vesca)