PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2460_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family M-type_MADS
Protein Properties Length: 409aa    MW: 46271.2 Da    PI: 5.3357
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2460_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.96.4e-241053245
                                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                                         r e++snrqvt+skRr gilKKA+ELSvLCd+++ +++fs+tgk
  cra_locus_2460_iso_4_len_2167_ver_3 10 RLESSSNRQVTYSKRRSGILKKAKELSVLCDIDIVLLMFSPTGK 53
                                         679***************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.567161IPR002100Transcription factor, MADS-box
SMARTSM004323.5E-31160IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.15E-27295IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-19323IPR002100Transcription factor, MADS-box
PfamPF003198.6E-211155IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-192338IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-193859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MGRVKLKIRR LESSSNRQVT YSKRRSGILK KAKELSVLCD IDIVLLMFSP TGKPTIFRGA  60
RSNIDEIISK FAQLSPQERA KRKLESLEVL RKTFKKLDHD INIQEYLDAS SPSLEELCSQ  120
ARVLQAQLTE VHKKLSWWSN PEKIEDIDHL RQMENSLRES LNRLREYKFQ NGMNLPVMMD  180
GDKERQPLTT WLASHDNQQL LLAEVPNLIS QGDIECARDQ SLPCCSVHYN TGQETELHNT  240
GRVDNVEFTQ NMSLPNCTGF FGTAKIGETT DIRSMDNLEC PSDPSLQSCS SLLYNGKEPE  300
IDNSSEMDKI TQESAAMDDL SAIACLRLQL GGQQAYYPFS TLTVPEVKKL DVGKEMNFQD  360
NSMSYQIQGN FEVPSSMYGN VQHAWNHPAD ACASNMIDGN SYPQPPDHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-15192190MEF2 CHIMERA
6byy_B1e-15192190MEF2 CHIMERA
6byy_C1e-15192190MEF2 CHIMERA
6byy_D1e-15192190MEF2 CHIMERA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027125662.10.0agamous-like MADS-box protein AGL65 isoform X2
TrEMBLA0A068UUT50.0A0A068UUT5_COFCA; Uncharacterized protein