PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_24506_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

TCP

Protein Properties

Length: 276aa MW: 28580.6 Da PI: 10.2071

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_24506_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	124.8	9.5e-39	43	137	2	98
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec. 73 a+kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ cra_locus_24506_iso_2_len_2184_ver_3 43 AVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSt 115 789*****************************************************************98884 PP TCP 74 .eaesssssasnsssg..kaaksaaksk 98 +a+s ++s+s+ s++ + k++ cra_locus_24506_iso_2_len_2184_ver_3 116 vSAASGRNSSSTLSAPldH------KPS 137 4444444444433333321......222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.2E-33	49	139	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.892	49	103	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
XSRYKEHLPM SSASADGNAN GNGAIIDPSQ RGNSSGNGST ALAVKKPPAK DRHSKVDGRG 60 RRIRMPIICA ARVFQLTREL GHKSDGQTIE WLLRQAEPSI IAATGTGTTP ASFSTVSAAS 120 GRNSSSTLSA PLDHKPSSQQ PLLAPTPFLL GKRLRSSNDD DNINDKDDGS GTVVGSTAIG 180 GGFWALPARP DLGQVWSFAA AAAVAQPEIV VPTLGATQQP GAAARFLQQP TAMGEASAAR 240 VGNYLPIAHQ GHLNLLASLS GPPPPPSSDQ REGDAR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027178548.1	1e-143	transcription factor TCP7-like
Swissprot	Q9FMX2	7e-83	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A068U7Q1	1e-140	A0A068U7Q1_COFCA; Uncharacterized protein
STRING	VIT_10s0042g00170.t01	1e-100	(Vitis vinifera)