PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_2447_iso_5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | HRT-like | ||||||||
Protein Properties | Length: 521aa MW: 58883.2 Da PI: 9.268 | ||||||||
Description | HRT-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HRT-like | 53.5 | 3.9e-17 | 251 | 281 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+l++G+vC+++P +gRKRC+eHKGm+i cra_locus_2447_iso_5_len_2175_ver_3 251 ICGVALGHGIVCRKPPSEGRKRCAEHKGMKI 281 8****************************97 PP | |||||||
2 | HRT-like | 53 | 5.5e-17 | 311 | 340 | 2 | 31 |
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 CGvil dG+ C+++Pv+g+KRC eHKG+++ cra_locus_2447_iso_5_len_2175_ver_3 311 CGVILADGTSCTTEPVQGNKRCLEHKGRKV 340 ***************************986 PP | |||||||
3 | HRT-like | 56.2 | 5.8e-18 | 392 | 422 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+l++G++C+rqP gRKRCeeHKGmR+ cra_locus_2447_iso_5_len_2175_ver_3 392 ICGVKLGHGTFCTRQPRVGRKRCEEHKGMRV 422 8*****************************7 PP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000033 | Biological Process | regulation of seed dormancy process | ||||
GO:0097100 | Molecular Function | supercoiled DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 521 aa Download sequence Send to blast |
MDLXCVLYAS FQILIGPSDW EDHAQGKEGA ERYRVGNLPN CSSCPGVYEL GIVESCHRSG 60 REASKLDPNF IIPVYLGKSD NARNRLQQYG REGAHLENGS SYWKQNYCNN VQAQEGLGLF 120 SEIFAKGFSI VYRWAPMTNS RDAEKTEAEL LDTFDYAWNK DSNGPRRRND ILRRIYRSSS 180 IPQFLQKFQF FPQRPKGIKI KACQPPFLED RYNLYTNFPP NNILARVLKF GRSRPILVPW 240 KSGIDEDNPS ICGVALGHGI VCRKPPSEGR KRCAEHKGMK INATSSNLLA EGKFTLAAEK 300 QIFEKDITLA CGVILADGTS CTTEPVQGNK RCLEHKGRKV RYNCPQSVQV KEEYFQSPKL 360 QYDNNQDIFQ RKDGRPNGFL GEKISNKNGN AICGVKLGHG TFCTRQPRVG RKRCEEHKGM 420 RVKKEAGSRC FTEETPCAFD SSGAKSYSSE EKKNHPFLPS LFSDKSSATC KLDYHNTNSR 480 CSPYGSLNED SSPFCGAPLR NGSYCRRRSN GRCWQHRDSR T |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027072338.1 | 1e-179 | protein EFFECTOR OF TRANSCRIPTION 2-like isoform X3 | ||||
TrEMBL | A0A068U3Z6 | 1e-177 | A0A068U3Z6_COFCA; Uncharacterized protein |