PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2447_iso_5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HRT-like
Protein Properties Length: 521aa    MW: 58883.2 Da    PI: 9.268
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2447_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like53.53.9e-17251281131
                             HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                                          iCGv+l++G+vC+++P +gRKRC+eHKGm+i
  cra_locus_2447_iso_5_len_2175_ver_3 251 ICGVALGHGIVCRKPPSEGRKRCAEHKGMKI 281
                                          8****************************97 PP

2HRT-like535.5e-17311340231
                             HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                                          CGvil dG+ C+++Pv+g+KRC eHKG+++
  cra_locus_2447_iso_5_len_2175_ver_3 311 CGVILADGTSCTTEPVQGNKRCLEHKGRKV 340
                                          ***************************986 PP

3HRT-like56.25.8e-18392422131
                             HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                                          iCGv+l++G++C+rqP  gRKRCeeHKGmR+
  cra_locus_2447_iso_5_len_2175_ver_3 392 ICGVKLGHGTFCTRQPRVGRKRCEEHKGMRV 422
                                          8*****************************7 PP

Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MDLXCVLYAS FQILIGPSDW EDHAQGKEGA ERYRVGNLPN CSSCPGVYEL GIVESCHRSG  60
REASKLDPNF IIPVYLGKSD NARNRLQQYG REGAHLENGS SYWKQNYCNN VQAQEGLGLF  120
SEIFAKGFSI VYRWAPMTNS RDAEKTEAEL LDTFDYAWNK DSNGPRRRND ILRRIYRSSS  180
IPQFLQKFQF FPQRPKGIKI KACQPPFLED RYNLYTNFPP NNILARVLKF GRSRPILVPW  240
KSGIDEDNPS ICGVALGHGI VCRKPPSEGR KRCAEHKGMK INATSSNLLA EGKFTLAAEK  300
QIFEKDITLA CGVILADGTS CTTEPVQGNK RCLEHKGRKV RYNCPQSVQV KEEYFQSPKL  360
QYDNNQDIFQ RKDGRPNGFL GEKISNKNGN AICGVKLGHG TFCTRQPRVG RKRCEEHKGM  420
RVKKEAGSRC FTEETPCAFD SSGAKSYSSE EKKNHPFLPS LFSDKSSATC KLDYHNTNSR  480
CSPYGSLNED SSPFCGAPLR NGSYCRRRSN GRCWQHRDSR T
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027072338.11e-179protein EFFECTOR OF TRANSCRIPTION 2-like isoform X3
TrEMBLA0A068U3Z61e-177A0A068U3Z6_COFCA; Uncharacterized protein