PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_2447_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

HRT-like

Protein Properties

Length: 481aa MW: 53760.5 Da PI: 8.9898

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_2447_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	53.7	3.5e-17	157	187	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+l++G+vC+++P +gRKRC+eHKGm+i cra_locus_2447_iso_2_len_1713_ver_3 157 ICGVALGHGIVCRKPPSEGRKRCAEHKGMKI 187 8****************************97 PP
2	HRT-like	53.2	5e-17	217	246	2	31
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 CGvil dG+ C+++Pv+g+KRC eHKG+++ cra_locus_2447_iso_2_len_1713_ver_3 217 CGVILADGTSCTTEPVQGNKRCLEHKGRKV 246 ***************************986 PP
3	HRT-like	56.3	5.3e-18	298	328	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+l++G++C+rqP gRKRCeeHKGmR+ cra_locus_2447_iso_2_len_1713_ver_3 298 ICGVKLGHGTFCTRQPRVGRKRCEEHKGMRV 328 8*****************************7 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000033	Biological Process	regulation of seed dormancy process
GO:0097100	Molecular Function	supercoiled DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence Send to blast
XENSKESINK YLHSVLHQTF LENVEILILP CVSIATDDKF KGMTNSRDAE KTEAELLDTF 60 DYAWNKDSNG PRRRNDILRR IYRSSSIPQF LQKFQFFPQR PKGIKIKACQ PPFLEDRYNL 120 YTNFPPNNIL ARVLKFGRSR PILVPWKSGI DEDNPSICGV ALGHGIVCRK PPSEGRKRCA 180 EHKGMKINAT SSNLLAEGKF TLAAEKQIFE KDITLACGVI LADGTSCTTE PVQGNKRCLE 240 HKGRKVRYNC PQSVQVKEEY FQSPKLQYDN NQDIFQRKDG RPNGFLGEKI SNKNGNAICG 300 VKLGHGTFCT RQPRVGRKRC EEHKGMRVKK EAGSRCFTEE TPCAFDSSGA KSYSSEEKKN 360 HPFLPSLFSD KSSATCKLDY HNTNSRCSPY GSLNEDSSPF CGAPLAMVPI VEGDLMVDVG 420 SIGTRGPNFE TSIGSSTLXH EAEDVHTAVR LGLLVQGGLP KTTNYPWKEA ENQSVLPSKS 480 R

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence Send to blast

XENSKESINK YLHSVLHQTF LENVEILILP CVSIATDDKF KGMTNSRDAE KTEAELLDTF  60
DYAWNKDSNG PRRRNDILRR IYRSSSIPQF LQKFQFFPQR PKGIKIKACQ PPFLEDRYNL  120
YTNFPPNNIL ARVLKFGRSR PILVPWKSGI DEDNPSICGV ALGHGIVCRK PPSEGRKRCA  180
EHKGMKINAT SSNLLAEGKF TLAAEKQIFE KDITLACGVI LADGTSCTTE PVQGNKRCLE  240
HKGRKVRYNC PQSVQVKEEY FQSPKLQYDN NQDIFQRKDG RPNGFLGEKI SNKNGNAICG  300
VKLGHGTFCT RQPRVGRKRC EEHKGMRVKK EAGSRCFTEE TPCAFDSSGA KSYSSEEKKN  360
HPFLPSLFSD KSSATCKLDY HNTNSRCSPY GSLNEDSSPF CGAPLAMVPI VEGDLMVDVG  420
SIGTRGPNFE TSIGSSTLXH EAEDVHTAVR LGLLVQGGLP KTTNYPWKEA ENQSVLPSKS  480
R

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027158023.1	1e-102	protein EFFECTOR OF TRANSCRIPTION 2-like