PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_23821_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

MYB_related

Protein Properties

Length: 323aa MW: 34445.5 Da PI: 9.3229

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_23821_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.2	1.9e-13	107	151	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++ G+g+W+ I++ + k+Rt+ q+ s+ qky cra_locus_23821_iso_3_len_1370_ver_3 107 PWTEEEHRLFLLGLQKVGKGDWRGISKNFVKTRTPTQVASHAQKY 151 7*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.46	100	156	IPR017930	Myb domain
SuperFamily	SSF46689	3.07E-17	102	157	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.1E-17	103	154	IPR006447	Myb domain, plants
SMART	SM00717	1.1E-9	104	154	IPR001005	SANT/Myb domain
Pfam	PF00249	4.6E-11	107	151	IPR001005	SANT/Myb domain
CDD	cd00167	1.32E-9	107	152	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.3E-11	107	151	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0009723	Biological Process	response to ethylene
GO:0009733	Biological Process	response to auxin
GO:0009737	Biological Process	response to abscisic acid
GO:0009739	Biological Process	response to gibberellin
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0031540	Biological Process	regulation of anthocyanin biosynthetic process
GO:0046686	Biological Process	response to cadmium ion
GO:0080167	Biological Process	response to karrikin
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003682	Molecular Function	chromatin binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MSSSCSLCGN EGHSSNTCSD VVGGGGAVAA DGGSCGKGFM LFGVRLMAVA DGGGSGFRKC 60 ASMNNLAQFD HQQQPHDVSN DVINPGYASD DVVHPSAGSR ERKRGIPWTE EEHRLFLLGL 120 QKVGKGDWRG ISKNFVKTRT PTQVASHAQK YFLRRNNHNR RRRRSSLFDI TTDTVLKPAA 180 VEDRSTQDSV PPQLPTAAQQ QNLINNLQKF HTSGGSYPIN FTPADLLVTG AKSSENFTSG 240 KFCQIPLAPP PPVPPSSKMA DLNLNKTTII TDPLPLSLKL SASSPPPSSP DQKSSSAARH 300 PSAFQAMPNS FDSNSGDSII SVA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor (PubMed:23888064, PubMed:24806884). Direct regulator of the transcription of peroxidase (Prxs) and reactive oxygen species (ROS)-related genes via the recognition of 5'-ATCACA-3' motif (PubMed:24806884). Binds to 5'-TATCCA-3' motif (TA box) and represses the activity of corresponding promoters (e.g. sugar response genes) (PubMed:25920996). Regulates hypocotyl elongation in response to darkness by enhancing auxin accumulation in a phytochrome-interacting factor (PIF) proteins-dependent manner. Promotes lateral roots formation (PubMed:23888064). Promotes cell expansion during leaves development via the modulation of cell wall-located Prxs (PubMed:24806884). Plays a critical role in developmentally regulated and dark-induced onset of leaf senescence by repressing the transcription of several genes involved in chloroplast function and responses to light and auxin. Promotes responses to auxin, abscisic acid (ABA), and ethylene (PubMed:25920996). {ECO:0000269\|PubMed:23888064, ECO:0000269\|PubMed:24806884, ECO:0000269\|PubMed:25920996}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00630	PBM	Transfer from PK17526.1	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by CdCl(2) (PubMed:16463103). Accumulates in the dark (PubMed:23888064, PubMed:25920996). Diurnal expression pattern with maximal levels in the morning (at protein level). Specifically induced during leaf expansion (PubMed:24806884). Expressed in old and dark-treated leaves (PubMed:25920996). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:23888064, ECO:0000269\|PubMed:24806884, ECO:0000269\|PubMed:25920996}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027150714.1	1e-108	transcription factor MYB1R1
Swissprot	Q9LVS0	4e-52	KUA1_ARATH; Transcription factor KUA1
TrEMBL	A0A068TW55	1e-106	A0A068TW55_COFCA; Uncharacterized protein
STRING	evm.model.supercontig_5.314	2e-89	(Carica papaya)

Publications ? help Back to Top
Liu C,Wang B,Li Z,Peng Z,Zhang J TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]