PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2379_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family BES1
Protein Properties Length: 364aa    MW: 39258.1 Da    PI: 7.4655
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2379_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822190.94.6e-59401841148
                               DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgsk 74 
                                          ++++r ptwkErEnnkrRERrRRaiaaki+aGLR++Gnyklpk++DnneVlkALc+eAGw+ve+DGttyrkg+k
  cra_locus_2379_iso_2_len_1463_ver_3  40 TSGTRLPTWKERENNKRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCNEAGWIVEEDGTTYRKGCK 113
                                          5899********************************************************************** PP

                               DUF822  75 pleeaeaagssasaspesslqsslkssalaspvesysaspksssfpspssldsislasa.....asllpvlsvl 143
                                          p  e +  g                      p++sy++sp+sssfpsp+s++ + ++ +     +sl+p+l++l
  cra_locus_2379_iso_2_len_1463_ver_3 114 PA-EXHGYGXXXXXXXXXXX-------XXXXPIASYNPSPSSSSFPSPVSSQYAAANVNntadaNSLIPWLKNL 179
                                          **.55555555555554443.......4799*****************99887655544567779********9 PP

                               DUF822 144 slvss 148
                                          s+ ss
  cra_locus_2379_iso_2_len_1463_ver_3 180 SSGSS 184
                                          98544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056873.0E-6041180IPR008540BES1/BZR1 plant transcription factor, N-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
XPGPIKPASL FPAGLQNCSS EQSXAERELP EELERHRQMT SGTRLPTWKE RENNKRRERR  60
RRAIAAKIFA GLRMYGNYKL PKHCDNNEVL KALCNEAGWI VEEDGTTYRK GCKPAEXHGY  120
GXXXXXXXXX XXXXXXPIAS YNPSPSSSSF PSPVSSQYAA ANVNNTADAN SLIPWLKNLS  180
SGSSPASSKL HHNLYIPSGS ISAPVTPPLS SPTARTPRMQ DGWNDNAGSA WASPQFAFLP  240
SSTPSSPGRL TPPDSGWLSG VQTPNDGPSS PTFSLVASNP FGTKEPFSNG GSRMWTPGQS  300
GTCSPAIAAG FDQTADVPMT DAVSAEFAFG SNTKGLVKPW EGERIHEECV SDDLELTLGN  360
PSTR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A1e-2344114372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B1e-2344114372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C1e-2344114372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D1e-2344114372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00248DAPTransfer from AT1G78700Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101448.11e-157BES1/BZR1 homolog protein 4-like
SwissprotQ9ZV881e-116BEH4_ARATH; BES1/BZR1 homolog protein 4
TrEMBLA0A2G9HVA01e-157A0A2G9HVA0_9LAMI; Uncharacterized protein
STRINGXP_009607196.11e-144(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19842464