PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_23708_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GRAS
Protein Properties Length: 498aa    MW: 54779.9 Da    PI: 5.5333
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_23708_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS322.77.4e-991024921374
                                  GRAS   1 lvelLlecAeavss..gdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvs.el..ykalpps 67 
                                           lv+lL+++Aea++   ++ ela+ +L rl+el + +dg++m+Rlaayf+eAL+  l + +  ++  +k l + 
  cra_locus_23708_iso_1_len_1956_ver_3 102 LVHLLMAAAEALTGinKSRELARVILVRLKELvCPNDGTNMERLAAYFAEALQGLLDGVGVgGVngSKRLLTV 174
                                           68***********84355569***********555566*****************988433122113333333 PP

                                  GRAS  68 etsekn.......sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa 133
                                             ++++        +  +aa++l++++sP++kf+h+taNqaIleav +++rvHi+D+di++G+QW++L+qa+ 
  cra_locus_23708_iso_1_len_1956_ver_3 175 GFHNYKddddhpqADVLAAAFQLLQDMSPYVKFGHFTANQAILEAVGHDRRVHIVDYDIMEGIQWASLMQAMV 247
                                           3333333456676777778899*************************************************** PP

                                  GRAS 134 sRp....egppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                                           sR+     ++p+lRiT++++        s  +++etg+rLa fA+++g pf+f+    ++ e+++ ++L++ +
  cra_locus_23708_iso_1_len_1956_ver_3 248 SRNkdggPPTPHLRITALSRGGGAnsrrSFGTIQETGRRLAAFAASIGQPFSFHHCGLDSDETFRSSSLKLVR 320
                                           ***77433366*******98443366678899***********************9999************** PP

                                  GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfds 270
                                           gEal+ n++l+l ++  +    ++ + ++L+  k+l+P+++++ve+ea   +++ F+++f+++l++ysa++ds
  cra_locus_23708_iso_1_len_1956_ver_3 321 GEALIMNCMLHLPHFSYR---APDSIASFLSEAKTLNPRLITLVEEEAGPtGDGGFVAKFMDSLHHYSAVYDS 390
                                           *************99844...4444569*******************9988********************** PP

                                  GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343
                                           lea++p + ++r+ vEr++lg++i   va   ++r e      +W e+l+++GF+p  +s  + +qaklll  
  cra_locus_23708_iso_1_len_1956_ver_3 391 LEAGFPMQGRARALVERVFLGPRIAATVARIYRARGEVDG--CSWGEWLSRMGFHPNGISFANHCQAKLLLGL 461
                                           *********************************9776655..89***************************** PP

                                  GRAS 344 vksdgyrveee.sgslvlgWkdrpLvsvSaWr 374
                                           ++ dgyrvee  s+ lvlgWk+r+L+s+S+W+
  cra_locus_23708_iso_1_len_1956_ver_3 462 FN-DGYRVEELaSNKLVLGWKSRRLLSASVWT 492
                                           **.******876999****************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098549.79776472IPR005202Transcription factor GRAS
PfamPF035142.6E-96102492IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MAMLMKNTLV DLDFPCYSTT TTTTTSTEDD HCCDWSDWSP VVDWDELSGD NNDFHDLIDS  60
MMGDNAVLYH PDSRSSSAIS PESVIMDIED NSSLEDLKGL RLVHLLMAAA EALTGINKSR  120
ELARVILVRL KELVCPNDGT NMERLAAYFA EALQGLLDGV GVGGVNGSKR LLTVGFHNYK  180
DDDDHPQADV LAAAFQLLQD MSPYVKFGHF TANQAILEAV GHDRRVHIVD YDIMEGIQWA  240
SLMQAMVSRN KDGGPPTPHL RITALSRGGG ANSRRSFGTI QETGRRLAAF AASIGQPFSF  300
HHCGLDSDET FRSSSLKLVR GEALIMNCML HLPHFSYRAP DSIASFLSEA KTLNPRLITL  360
VEEEAGPTGD GGFVAKFMDS LHHYSAVYDS LEAGFPMQGR ARALVERVFL GPRIAATVAR  420
IYRARGEVDG CSWGEWLSRM GFHPNGISFA NHCQAKLLLG LFNDGYRVEE LASNKLVLGW  480
KSRRLLSASV WTSLNSDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-539549211378Protein SCARECROW
5b3h_D4e-539549211378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027093922.10.0nodulation-signaling pathway 2 protein-like
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A2K2AI350.0A0A2K2AI35_POPTR; Uncharacterized protein
STRINGPOPTR_0005s15900.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122411923
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]