PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_23695_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bHLH | ||||||||
Protein Properties | Length: 278aa MW: 31208.7 Da PI: 7.2624 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.9 | 4.3e-09 | 150 | 197 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L++++P + +k + a +L + ++Y++sLq cra_locus_23695_iso_1_len_833_ver_3 150 SHSLAERVRREKINERLRCLQDIVPGC----HKTMGMAVMLDEIINYVQSLQ 197 8*************************9....788*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.68E-10 | 144 | 201 | No hit | No description |
SuperFamily | SSF47459 | 4.84E-17 | 144 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-16 | 146 | 208 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.516 | 146 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.5E-6 | 150 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-9 | 152 | 202 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
XQTSSLLSID PNMGILTNFP ELSPADLDNS NFNIHNLLNG FSQDCFFSQL PEFPGNLAEN 60 FPAFFPPSDH HPLTCATNDH HHQHKKRKEM DDTPETSNSA NSSPPVSENG IRRKNSTRGR 120 GKKAKCNSKE EDKPKDVVHV RARRGQATDS HSLAERVRRE KINERLRCLQ DIVPGCHKTM 180 GMAVMLDEII NYVQSLQNQV EFLSMKLTAA STFYNFNAEN DTMDIMQRAK AYEAMKMQKL 240 LREGCDGGVI STQIGLPLLD LTFGSCPSLP YNTXRCSI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027124781.1 | 1e-112 | transcription factor BEE 3-like | ||||
Refseq | XP_027124804.1 | 1e-112 | transcription factor BEE 3-like | ||||
Swissprot | Q8GWK7 | 1e-59 | BEE3_ARATH; Transcription factor BEE 3 | ||||
TrEMBL | A0A2R6PCD7 | 1e-101 | A0A2R6PCD7_ACTCH; Transcription factor BEE like | ||||
STRING | XP_007154151.1 | 1e-95 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3971 | 23 | 44 |
Publications ? help Back to Top | |||
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