PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2333_iso_10
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family FAR1
Protein Properties Length: 272aa    MW: 31675.1 Da    PI: 7.45
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2333_iso_10genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR129.52.4e-0994181490
                                  FAR1   4 neYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dg 74 
                                           + ++k+v Fsvrk+   ++++++ i    +vCskeg+r+ +  + ++k +++++  +     +l+v+  k  g
  cra_locus_2333_iso_10_len_2247_ver_3  94 SCHSKMVSFSVRKDDLIQEEEDR-ISYGCWVCSKEGFRKAKFLNvSNKIKSSKVIYKSRLXSMLEVSYGKtMG 165
                                           567899*********99995555.9999************9988566777888999999*********9999* PP

                                  FAR1  75 kwevtkleleHnHela 90 
                                            ++++k+  eHnH l+
  cra_locus_2333_iso_10_len_2247_ver_3 166 CYRIMKFYREHNHFLV 181
                                           *************886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.5E-794181IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
XVHXQCXISN NVLPVHLSVE DILMHKIDFM AYAIRNYTWE KDDVELSSKE KGEMTPRESE  60
QSVNLDVECL SILSFEKIRG LRFQSIKDVE EFCSCHSKMV SFSVRKDDLI QEEEDRISYG  120
CWVCSKEGFR KAKFLNVSNK IKSSKVIYKS RLXSMLEVSY GKTMGCYRIM KFYREHNHFL  180
VDPRCVHFLR SYRNVSTLGI TEAQSMCAVD IGIPQIIEYQ SHQREGYSKL NYIAKDLRNA  240
IDTQQREELS SRDAHCTLSY LDGRSRGDSG FY