PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_2333_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | FAR1 | ||||||||
Protein Properties | Length: 272aa MW: 31675.1 Da PI: 7.45 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 29.5 | 2.4e-09 | 94 | 181 | 4 | 90 |
FAR1 4 neYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkw 76 + ++k+v Fsvrk+ ++++++ i +vCskeg+r+ + + ++k +++++ + +l+v+ k g + cra_locus_2333_iso_1_len_995_ver_3 94 SCHSKMVSFSVRKDDLIQEEEDR-ISYGCWVCSKEGFRKAKFLNvSNKIKSSKVIYKSRLXSMLEVSYGKtMGCY 167 567899*********99995555.9999************9988566777888999999*********9999*** PP FAR1 77 evtkleleHnHela 90 +++k+ eHnH l+ cra_locus_2333_iso_1_len_995_ver_3 168 RIMKFYREHNHFLV 181 ***********886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.5E-7 | 94 | 181 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
XVHXQCXISN NVLPVHLSVE DILMHKIDFM AYAIRNYTWE KDDVELSSKE KGEMTPRESE 60 QSVNLDVECL SILSFEKIRG LRFQSIKDVE EFCSCHSKMV SFSVRKDDLI QEEEDRISYG 120 CWVCSKEGFR KAKFLNVSNK IKSSKVIYKS RLXSMLEVSY GKTMGCYRIM KFYREHNHFL 180 VDPRCVHFLR SYRNVSTLGI TEAQSMCAVD IGIPQIIEYQ SHQREGYSKL NYIAKDLRNA 240 IDTQQREELS SRDAHCTLSY LDGRSRGDSG FY |