PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_23063_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 181aa MW: 20985.7 Da PI: 9.8608 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.4 | 6e-19 | 12 | 66 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++ ++++eq++ Le+ F+ n++++ +++ +LA++lgLt r+V +W+qN+Ra++k+ cra_locus_23063_iso_1_len_688_ver_3 12 HKKRLSEEQIRLLETSFNLNNKLDPDRKSQLAQELGLTPRKVAIWYQNKRARWKN 66 56779************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 106.5 | 2e-34 | 12 | 103 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalke 75 +k+rls+eq++lLE+sF+ ++kL+p+rK++la+eLgl+pr+va+W+qn+RAR+k++ lE+++++L+ +++ l+e cra_locus_23063_iso_1_len_688_ver_3 12 HKKRLSEEQIRLLETSFNLNNKLDPDRKSQLAQELGLTPRKVAIWYQNKRARWKNQSLEVNHKSLQVRLEGLVE 85 69************************************************************************ PP HD-ZIP_I/II 76 enerLekeveeLreelke 93 +ne+L+ eve+L++el++ cra_locus_23063_iso_1_len_688_ver_3 86 DNEKLRIEVERLKQELQK 103 ***************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.649 | 7 | 67 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.6E-17 | 9 | 71 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.02E-14 | 10 | 68 | No hit | No description |
SuperFamily | SSF46689 | 9.19E-18 | 11 | 72 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 3.4E-16 | 12 | 66 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-19 | 14 | 71 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 6.7E-6 | 38 | 47 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 42 | 65 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 6.7E-6 | 47 | 63 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009646 | Biological Process | response to absence of light | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
SHARKQQHLK YHKKRLSEEQ IRLLETSFNL NNKLDPDRKS QLAQELGLTP RKVAIWYQNK 60 RARWKNQSLE VNHKSLQVRL EGLVEDNEKL RIEVERLKQE LQKAQEILLS INSYNYNYNT 120 TYSNSISSSC DEVGSSISLL RGGSKNDGAG LDKEDLFACL IGTTNWRSRF LSASIYFLII 180 N |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 14 | RKQQHLKYHKKR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009800499.1 | 2e-61 | PREDICTED: homeobox-leucine zipper protein ATHB-52-like | ||||
TrEMBL | A0A1U7YMN8 | 5e-60 | A0A1U7YMN8_NICSY; homeobox-leucine zipper protein ATHB-52-like | ||||
STRING | XP_009800499.1 | 9e-61 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2715 | 24 | 53 |