PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_23016_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bHLH | ||||||||
Protein Properties | Length: 191aa MW: 20993.9 Da PI: 10.2306 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.3 | 8.7e-06 | 3 | 31 | 22 | 55 |
HHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 22 eLrellPkaskapskKlsKaeiLekAveYIksLq 55 L++l+P+a K +Ka++L +++ Y+k+Lq cra_locus_23016_iso_4_len_629_ver_3 3 ALQKLVPNA-----SKTDKASMLDEVIVYLKQLQ 31 799*****9.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 9.99E-7 | 1 | 35 | No hit | No description |
PROSITE profile | PS50888 | 11.325 | 1 | 30 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.0E-9 | 1 | 43 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-9 | 2 | 50 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MKALQKLVPN ASKTDKASML DEVIVYLKQL QNEVQMMSRN MALPQMMMMM NPLAMQQQLQ 60 MSLLARMGMG MGVGLGMGMG MLDSNTLVRS TTSPISSGLI STTPMPSSFL PSHFAMPTAP 120 HPSQPKSSAT NPAPPPFADP YTSFLAQQAM NMDIYKMAAL YRQHQQANQA TQATSNSSQP 180 NFIQREXHKN X |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015571977.1 | 8e-49 | transcription factor PIF7 isoform X1 | ||||
Refseq | XP_015571978.1 | 5e-49 | transcription factor PIF7 isoform X2 | ||||
TrEMBL | A0A068V9P2 | 6e-41 | A0A068V9P2_COFCA; Uncharacterized protein | ||||
TrEMBL | A0A2G9GYD1 | 5e-41 | A0A2G9GYD1_9LAMI; Uncharacterized protein | ||||
STRING | EOY21971 | 2e-37 | (Theobroma cacao) |