PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_23016_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 459aa MW: 50048.4 Da PI: 9.3522

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_23016_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	46.2	8.3e-15	254	299	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ ErrRRdriN+++ L++l+P+a K +Ka++L +++ Y+k+Lq cra_locus_23016_iso_2_len_1374_ver_3 254 HNQSERRRRDRINEKMKALQKLVPNA-----SKTDKASMLDEVIVYLKQLQ 299 9**********************9.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.7E-18	247	318	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.098	249	298	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.9E-12	254	299	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.8E-18	254	311	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.22E-15	254	303	No hit	No description
SMART	SM00353	4.8E-17	255	304	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence Send to blast
XLSQQIRQVE AGEEERNRSS SSSHVHHHHH RQTHRPPYYV VPISNYEVAE LTWENGQLAM 60 HGLTGAGILQ PPASKPPPTP TFGDTLESIV HQATAGAPPI NINPISAATA SGGGVEKRAS 120 FVKKRMRSSE SDQSGRHNIS SSRIRSSFND DQQMVVGGGG GGGAGATAAE RSACASESAT 180 FCREKDAGTT TMMTWTSFES PPGTGSFKTH NNKTTDDDSA CHDASENCRD QEMDTKGESV 240 RSQSARRSRA AFIHNQSERR RRDRINEKMK ALQKLVPNAS KTDKASMLDE VIVYLKQLQN 300 EVQMMSRNMA LPQMMMMMNP LAMQQQLQMS LLARMGMGMG VGLGMGMGML DSNTLVRSTT 360 SPISSGLIST TPMPSSFLPS HFAMPTAPHP SQPKSSATNP APPPFADPYT SFLAQQAMNM 420 DIYKMAALYR QHQQANQATQ ATSNSSQPNF IQREXHKNX

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence Send to blast

XLSQQIRQVE AGEEERNRSS SSSHVHHHHH RQTHRPPYYV VPISNYEVAE LTWENGQLAM  60
HGLTGAGILQ PPASKPPPTP TFGDTLESIV HQATAGAPPI NINPISAATA SGGGVEKRAS  120
FVKKRMRSSE SDQSGRHNIS SSRIRSSFND DQQMVVGGGG GGGAGATAAE RSACASESAT  180
FCREKDAGTT TMMTWTSFES PPGTGSFKTH NNKTTDDDSA CHDASENCRD QEMDTKGESV  240
RSQSARRSRA AFIHNQSERR RRDRINEKMK ALQKLVPNAS KTDKASMLDE VIVYLKQLQN  300
EVQMMSRNMA LPQMMMMMNP LAMQQQLQMS LLARMGMGMG VGLGMGMGML DSNTLVRSTT  360
SPISSGLIST TPMPSSFLPS HFAMPTAPHP SQPKSSATNP APPPFADPYT SFLAQQAMNM  420
DIYKMAALYR QHQQANQATQ ATSNSSQPNF IQREXHKNX

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	257	262	ERRRRD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015571977.1	1e-112	transcription factor PIF7 isoform X1
TrEMBL	A0A068V9P2	1e-106	A0A068V9P2_COFCA; Uncharacterized protein
STRING	EOY21971	2e-99	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5437	17	32