PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_22954_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HD-ZIP
Protein Properties Length: 267aa    MW: 28803.7 Da    PI: 6.6354
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_22954_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.13.1e-1873125456
                                          -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                             Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                          + +++ eq+++Le+ Fe  +++  e++++LA+ lgL+ rq+ +WFqNrRa++k
  cra_locus_22954_iso_1_len_956_ver_3  73 KKRLSLEQVKALEKSFELGNKLEPERKTQLARALGLQPRQIAIWFQNRRARWK 125
                                          556899**********************************************9 PP
2HD-ZIP_I/II130.94.9e-4271162192
                          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalk 74 
                                          ekk+rls eqvk+LE+sFe  +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy+ Lkr+++alk
  cra_locus_22954_iso_1_len_956_ver_3  71 EKKKRLSLEQVKALEKSFELGNKLEPERKTQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDILKRQFEALK 144
                                          69************************************************************************ PP

                          HD-ZIP_I/II  75 eenerLekeveeLreelk 92 
                                          ++n++L++++++L++el 
  cra_locus_22954_iso_1_len_956_ver_3 145 ADNDALKSQNKKLQSELV 162
                                          **************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.61E-1962129IPR009057Homeodomain-like
PROSITE profilePS5007116.87667127IPR001356Homeobox domain
SMARTSM003895.1E-1870131IPR001356Homeobox domain
CDDcd000866.74E-1772128No hitNo description
PfamPF000461.9E-1573125IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-1974134IPR009057Homeodomain-like
PRINTSPR000318.5E-698107IPR000047Helix-turn-helix motif
PROSITE patternPS000270102125IPR017970Homeobox, conserved site
PRINTSPR000318.5E-6107123IPR000047Helix-turn-helix motif
PfamPF021833.7E-15127167IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MAFVPADSMF PNHEDHAHLP STSLSSCPPH DFQGVNSVLM RRSMSFSGMD RCEEARGDDE  60
MSDDGVTPLG EKKKRLSLEQ VKALEKSFEL GNKLEPERKT QLARALGLQP RQIAIWFQNR  120
RARWKTKQLE KDYDILKRQF EALKADNDAL KSQNKKLQSE LVALQSRESN GHGTNAAGAG  180
AGGGGPINLN KENEGAASWS NGSENSIDVN LGTTGTTTTA SVDSSLRITN INNNSNIFPS  240
SSTSLTHLLH AAAAAGGGPP LTVDEGX
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119127RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:12644682}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098601.11e-103homeobox-leucine zipper protein HOX21
SwissprotQ8LAT02e-68ATB20_ARATH; Homeobox-leucine zipper protein ATHB-20
TrEMBLA0A251S7S16e-97A0A251S7S1_HELAN; Putative leucine zipper, homeobox-associated, Homeodomain-like protein
STRINGMigut.H00906.1.p7e-95(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8482498