PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_228_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

GeBP

Protein Properties

Length: 313aa MW: 34711.7 Da PI: 10.2581

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_228_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	125.2	2.9e-39	90	187	1	98
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksg 75 klfqrlwse+Dei++LqG+id++ak++++p++d++af ef+kks++++vs++ql +KirrLKkK++++ +k k+g cra_locus_228_iso_4_len_1290_ver_3 90 KLFQRLWSEDDEIAILQGMIDYQAKKKADPVADLNAFLEFIKKSLHIDVSRTQLQDKIRRLKKKYENNASKGKKG 164 579********************************************************************** PP DUF573 76 kepsfskehdqkifelskkiWgs 98 ke++fsk+h+q ++elskkiWg+ cra_locus_228_iso_4_len_1290_ver_3 165 KEKVFSKAHEQMSYELSKKIWGQ 187 *******************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.5E-34	92	186	IPR007592	Protein of unknown function DUF573

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
KPNPNIKPIA SKPMDEVQKS PTTRKPRSKS NASGPTSPTK PTPSPGAKRP SGAVGVSDGE 60 TKDAKRSKKK SETGVETVEK TVNSNDDSKK LFQRLWSEDD EIAILQGMID YQAKKKADPV 120 ADLNAFLEFI KKSLHIDVSR TQLQDKIRRL KKKYENNASK GKKGKEKVFS KAHEQMSYEL 180 SKKIWGQGNS AEESVLESPK VNGTAVRKSR TKNAPVLAPK LDEPEEAVKE DKILGGEKSV 240 EGLKGVHIGL GSQGIEGWIA KKGMEVIKGE KREEMEEKWK KLNVEEIEIY AKKLELMLEQ 300 TKSVLEALKS SVH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027074766.1	1e-117	probable transcription factor At4g00390
TrEMBL	A0A1S3B0Q1	1e-80	A0A1S3B0Q1_CUCME; mediator-associated protein 1
STRING	XP_008439944.1	2e-81	(Cucumis melo)