PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2287_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family NAC
Protein Properties Length: 429aa    MW: 48208.9 Da    PI: 5.0812
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2287_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.73.8e-52281551128
                                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgk 72 
                                          l+pGfrFhPtdeelv +yL++k+ gk++++ ++++e+d+yk+ePw+L   +++k+++ ewyfFs+ d+ky +g+
  cra_locus_2287_iso_4_len_2033_ver_3  28 LAPGFRFHPTDEELVRYYLRRKACGKPFRF-QAVSEIDVYKSEPWELAcfSSLKTRDLEWYFFSPVDRKYGNGS 100
                                          579*************************99.88**************85347777888**************** PP

                                  NAM  73 rknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                          r nrat +gyWkatgkd++v + k++++g+kktLvf++grap+g++t+Wvmheyrl
  cra_locus_2287_iso_4_len_2033_ver_3 101 RLNRATGKGYWKATGKDRPVRH-KNQTIGMKKTLVFHSGRAPDGKRTNWVMHEYRL 155
                                          **********************.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-5824165IPR003441NAC domain
PROSITE profilePS5100555.3928211IPR003441NAC domain
PfamPF023653.0E-2830155IPR003441NAC domain
SuperFamilySSF1019416.28E-58199211IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MGQELVAVTP ATPVGGGISG SAPPATSLAP GFRFHPTDEE LVRYYLRRKA CGKPFRFQAV  60
SEIDVYKSEP WELACFSSLK TRDLEWYFFS PVDRKYGNGS RLNRATGKGY WKATGKDRPV  120
RHKNQTIGMK KTLVFHSGRA PDGKRTNWVM HEYRLVDEEL EKAGVPQVVT VNLDLSLXIV  180
DCDFFSCWNL QRTFYCHGEK DTFVLCRIFQ KSGLGPPNGD RYAPFIEEEW DDDAALMVVP  240
GGEAEDDMAN GDEARVGCND LDQDMNKATR RGENPVEGMI PFMCKRERSE EPEPLSLGQA  300
KRSKHDDPNS SHANGSEDST TTSQDPTLMT TTNFSSALLE FPLLESVEPK ESQPSNPQTF  360
DSSNLEKSVP PGYLKFISNL ENEILNVSME RETLKIEVMR AQAMINILQS RIDLLNKENE  420
DLRRLGRGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-462715716144NO APICAL MERISTEM PROTEIN
1ut4_B1e-462715716144NO APICAL MERISTEM PROTEIN
1ut7_A1e-462715716144NO APICAL MERISTEM PROTEIN
1ut7_B1e-462715716144NO APICAL MERISTEM PROTEIN
3swm_A1e-462715719147NAC domain-containing protein 19
3swm_B1e-462715719147NAC domain-containing protein 19
3swm_C1e-462715719147NAC domain-containing protein 19
3swm_D1e-462715719147NAC domain-containing protein 19
3swp_A1e-462715719147NAC domain-containing protein 19
3swp_B1e-462715719147NAC domain-containing protein 19
3swp_C1e-462715719147NAC domain-containing protein 19
3swp_D1e-462715719147NAC domain-containing protein 19
4dul_A1e-462715716144NAC domain-containing protein 19
4dul_B1e-462715716144NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00612ChIP-seqTransfer from AT3G10490Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027111444.10.0NAC domain containing protein 50-like
RefseqXP_027161643.10.0NAC domain containing protein 50-like
TrEMBLA0A068TWS90.0A0A068TWS9_COFCA; Uncharacterized protein
STRINGXP_009619467.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31402448