PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_2271_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | WRKY | ||||||||
Protein Properties | Length: 207aa MW: 23187.4 Da PI: 7.8208 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 26.9 | 9.5e-09 | 175 | 192 | 1 | 18 |
---SS-EEEEEEE--TT- CS WRKY 1 ldDgynWrKYGqKevkgs 18 ldDgy+WrKYGqK+vk++ cra_locus_2271_iso_3_len_1453_ver_3 175 LDDGYKWRKYGQKVVKKA 192 59**************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.7E-10 | 160 | 193 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-7 | 167 | 193 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 10.866 | 170 | 190 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.3E-5 | 176 | 193 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MEGEIRCGGL TPNYHELQTA ASFSNSPHHH HTAINEMGFV LHEFEDHHHH HQVLSFLAPS 60 SSQNPAETTT TATAANNNGS LGFNNHSHEL LNTTRPTTTS WNTTTQHQVG GGMDPKGVSN 120 SDQNCSTGNG NEHTNSSWWR SSNTSDRSNN NKVKVRRKLR EPRFCFQTRS DVDVLDDGYK 180 WRKYGQKVVK KASIQEVIID VRIITVV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 153 | 159 | KVRRKLR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027113402.1 | 1e-47 | probable WRKY transcription factor 12 | ||||
TrEMBL | A0A068UP64 | 6e-46 | A0A068UP64_COFCA; Uncharacterized protein | ||||
STRING | XP_010086778.1 | 1e-40 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7336 | 20 | 29 |