PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_22694_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 513aa MW: 57474.2 Da PI: 6.6644

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_22694_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.9	1.3e-06	306	330	7	30
HHHHHHHHHHHHHHHHHHCTSCC.C CS HLH 7 erErrRRdriNsafeeLrellPk.a 30 + Er+RR+ri++++++Lr l+P+ + cra_locus_22694_iso_1_len_1833_ver_3 306 ITERNRRSRIKNGLFTLRALVPNiS 330 68********************955 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	4.8E-15	22	158	IPR025610	Transcription factor MYC/MYB N-terminal
SuperFamily	SSF47459	5.37E-11	294	331	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.96E-5	297	389	No hit	No description
PROSITE profile	PS50888	11.293	299	384	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0047	305	390	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-10	306	329	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-10	366	401	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.37E-11	366	398	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 513 aa Download sequence Send to blast
MAAFEGAAVE CFRPLLVNNN NKAAWDFCIV WKLGDDPSRF IEWRGCCCSG ANISRYINVK 60 EENGQELLPR CRDAHLQHPL RTEACKLLAK FPSSNPLYSG IHGEVVISKQ PRWINNASSS 120 ILDEPFGTQV LIPVLGGLIE LFSRKQVPKD QQILDFIMAQ YISSSVEQEA RAALSFKKSN 180 SKVEEPLYCP IFDDWPRKFP ATIRDPSLKF PLTLSKSNSY PSIEGSSTGS SLPTDLGSSH 240 PSCNTSPEKS SGRYPLKRSQ TLDSKTRIEA SFSSPSVIAN QPAENEDGLK ARQRAQKESY 300 QSKNLITERN RRSRIKNGLF TLRALVPNIS KVLALNSGQN ARSLEPPTPF YVIISRVLIS 360 IFVFLPXMDM TAIIGDAIEY IQELQKNVKM YEDELKDMEE EDCSGYNAEQ NVPNSCWEHE 420 VSDNQPATEF TDNPSNLMAD DLRQQMIKLE VNQIGAKDIL LRIIYKERQG GFLRLMQAMD 480 ALGLQVVDVN VITSNGSVLN NLRVEAKGKE IKP

Sequence ? help Back to Top

Protein Sequence Length: 513 aa Download sequence Send to blast

MAAFEGAAVE CFRPLLVNNN NKAAWDFCIV WKLGDDPSRF IEWRGCCCSG ANISRYINVK  60
EENGQELLPR CRDAHLQHPL RTEACKLLAK FPSSNPLYSG IHGEVVISKQ PRWINNASSS  120
ILDEPFGTQV LIPVLGGLIE LFSRKQVPKD QQILDFIMAQ YISSSVEQEA RAALSFKKSN  180
SKVEEPLYCP IFDDWPRKFP ATIRDPSLKF PLTLSKSNSY PSIEGSSTGS SLPTDLGSSH  240
PSCNTSPEKS SGRYPLKRSQ TLDSKTRIEA SFSSPSVIAN QPAENEDGLK ARQRAQKESY  300
QSKNLITERN RRSRIKNGLF TLRALVPNIS KVLALNSGQN ARSLEPPTPF YVIISRVLIS  360
IFVFLPXMDM TAIIGDAIEY IQELQKNVKM YEDELKDMEE EDCSGYNAEQ NVPNSCWEHE  420
VSDNQPATEF TDNPSNLMAD DLRQQMIKLE VNQIGAKDIL LRIIYKERQG GFLRLMQAMD  480
ALGLQVVDVN VITSNGSVLN NLRVEAKGKE IKP

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9929	22	27