PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_22369_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | ERF | ||||||||
Protein Properties | Length: 91aa MW: 10160.3 Da PI: 10.1835 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 29.7 | 1.6e-09 | 35 | 82 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 s++kGV +g W A+I+ + +r++lg+f ++ e a a++ a kl+ cra_locus_22369_iso_3_len_1323_ver_3 35 SKFKGVVLQQ-NGHWGAQIYA------NhQRIWLGTFKSEVESAMAYDSASIKLR 82 79****9887.8******999......44**********99*********99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038123 | 1.2E-9 | 3 | 91 | IPR017392 | AP2/ERF transcription factor ERF/PTI6 |
SuperFamily | SSF54171 | 5.62E-14 | 35 | 91 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.79E-22 | 35 | 91 | No hit | No description |
Pfam | PF00847 | 9.0E-5 | 35 | 82 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-15 | 36 | 91 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.738 | 36 | 91 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-11 | 36 | 91 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 91 aa Download sequence Send to blast |
MAATNFTKEM SDSSSSSYLI QNSKRPKMDP NSSSSKFKGV VLQQNGHWGA QIYANHQRIW 60 LGTFKSEVES AMAYDSASIK LRSGDSHRNF P |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002276492.1 | 5e-37 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680 | ||||
Swissprot | Q9C688 | 9e-27 | RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120 | ||||
TrEMBL | A0A2R6PWH7 | 3e-36 | A0A2R6PWH7_ACTCH; AP2/ERF and B3 domain-containing transcription factor | ||||
STRING | VIT_11s0037g00010.t01 | 2e-36 | (Vitis vinifera) |