PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_2220_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

MYB_related

Protein Properties

Length: 273aa MW: 30836.4 Da PI: 7.5868

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_2220_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.1	1.3e-10	177	224	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E ++l+d+v q+G g+W+ I + + +Rt+ ++k++w+++l cra_locus_2220_iso_4_len_1245_ver_3 177 WTVSEVKKLIDGVSQYGVGRWSHIKKDLFsssAHRTAVDLKDKWRNLL 224 **********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.901	169	228	IPR017930	Myb domain
SuperFamily	SSF46689	4.34E-16	171	234	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.5E-13	171	230	IPR009057	Homeodomain-like
SMART	SM00717	1.4E-10	173	226	IPR001005	SANT/Myb domain
CDD	cd11660	8.53E-21	177	225	No hit	No description
Pfam	PF00249	1.8E-8	177	224	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
NFPVMLNQVM GDESAIPFLE DEAIEFECLL IEPQDRHISV DGFLCFRRNS PEKYVQLEDV 60 HCEFGGALGI KQEEEHLLGQ EVIHPKPIAS MAISEGDCIS SRKKQTPVAP KVLHSKPIAS 120 VAKSEEDFVS SQQMQLCIVP KVLDSEPVAS VATSGEDSLS IMKTVEEGGR RKHHILWTVS 180 EVKKLIDGVS QYGVGRWSHI KKDLFSSSAH RTAVDLKDKW RNLLKATCVQ TEGKRGEDKK 240 RNLAWRPLPK SVIRRVRELA VLYPYPRDFQ TKH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027071043.1	3e-63	uncharacterized protein LOC113695979 isoform X1
Refseq	XP_027071044.1	3e-63	uncharacterized protein LOC113695979 isoform X1
Refseq	XP_027071045.1	3e-63	uncharacterized protein LOC113695979 isoform X1
Refseq	XP_027071046.1	3e-63	uncharacterized protein LOC113695979 isoform X1
TrEMBL	A0A068UDZ0	2e-59	A0A068UDZ0_COFCA; Uncharacterized protein
STRING	Solyc09g007990.2.1	1e-46	(Solanum lycopersicum)