PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_22185_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

GeBP

Protein Properties

Length: 467aa MW: 51115.8 Da PI: 4.6445

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_22185_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	122.3	2.4e-38	147	245	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk...spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk 71 lfqrlw++eDei lLqG++d++a++g+ s ++d++afy+++k++++++++k+qlveK+rrLKkK+++ v+k cra_locus_22185_iso_1_len_1750_ver_3 147 LFQRLWTDEDEIELLQGFLDYTASKGAlnsSHHHDTTAFYDQIKNKLQLDFNKNQLVEKLRRLKKKYRNVVNK 219 79**********************99845556*********************************** PP DUF573 72 aksgkepsfskehdqkifelskkiWg 97 + sgke +f+++hdq +fe+s+kiW cra_locus_22185_iso_1_len_1750_ver_3 220 IGSGKEYVFKSPHDQATFEISRKIWS 245 ***********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	9.4E-35	148	245	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence Send to blast
MAADDRTTVY NGEGDIDDEE DDEEDDDLNP SNRVTAATTN PSDVVVYDED DEVDVDDDDV 60 DDSTSSSNLA TAYTDPSLHH LPTPLPSLPS VTAAAGQVTV ALPADLALPP DPKRHRIDDV 120 TVAAVSTVVN AVVEEKKPVP LDEQRRLFQR LWTDEDEIEL LQGFLDYTAS KGALNSSHHH 180 DTTAFYDQIK NKLQLDFNKN QLVEKLRRLK KKYRNVVNKI GSGKEYVFKS PHDQATFEIS 240 RKIWSGGGVT APRGGGGVVV AEEAGYDEED ANPNFNVHLI DQSPNPNPQN GVDLNTLDKK 300 TPRPRKRSRG GAVKIEEKQF GLNGVPNLQF SNQHHNIVRN ASMAVSTPIA TPTPTPTPTP 360 TPTPTPTPVG TGSAPAPNLI EGKVKSCLSP IFKELLHNAI NLNSPVFSSR GFGFALSPMP 420 LGLNGDLVAD EKWRKQQILE LEVYSKRLEL VQDQIKSQLE ELRSMGG

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence Send to blast

MAADDRTTVY NGEGDIDDEE DDEEDDDLNP SNRVTAATTN PSDVVVYDED DEVDVDDDDV  60
DDSTSSSNLA TAYTDPSLHH LPTPLPSLPS VTAAAGQVTV ALPADLALPP DPKRHRIDDV  120
TVAAVSTVVN AVVEEKKPVP LDEQRRLFQR LWTDEDEIEL LQGFLDYTAS KGALNSSHHH  180
DTTAFYDQIK NKLQLDFNKN QLVEKLRRLK KKYRNVVNKI GSGKEYVFKS PHDQATFEIS  240
RKIWSGGGVT APRGGGGVVV AEEAGYDEED ANPNFNVHLI DQSPNPNPQN GVDLNTLDKK  300
TPRPRKRSRG GAVKIEEKQF GLNGVPNLQF SNQHHNIVRN ASMAVSTPIA TPTPTPTPTP  360
TPTPTPTPVG TGSAPAPNLI EGKVKSCLSP IFKELLHNAI NLNSPVFSSR GFGFALSPMP  420
LGLNGDLVAD EKWRKQQILE LEVYSKRLEL VQDQIKSQLE ELRSMGG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027160496.1	1e-171	probable transcription factor At5g28040
TrEMBL	A0A068ULS6	1e-160	A0A068ULS6_COFCA; Uncharacterized protein
STRING	XP_009785461.1	1e-120	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4052	24	45