PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_2213_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

FAR1

Protein Properties

Length: 704aa MW: 81419.7 Da PI: 7.064

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_2213_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.6	1.6e-26	28	114	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdg 74 +fY+eYA vGF + k +s++s+ ++e+++++f C ++g++++++++ ++r++ ++gCka+++vk++++g cra_locus_2213_iso_2_len_2696_ver_3 28 EFYREYAXFVGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRRQNG 97 6**************************************999877....9****************** PP FAR1 75 kwevtkleleHnHelap 91 kw+++++++eHnHel p cra_locus_2213_iso_2_len_2696_ver_3 98 KWYIHSFVKEHNHELLP 114 ************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.7E-24	28	114	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.6E-7	243	281	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.484	469	505	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.1E-9	475	503	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.5E-7	480	507	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 704 aa Download sequence Send to blast
MESTTIIGNP IVEPQADTEF DSHEAAYEFY REYAXFVGFG TAKLSSRRSR ASKEFIDAKF 60 SCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRRQNGKWY IHSFVKEHNH ELLPAQAHFF 120 RSHRNVDPLK NDAKVRRRKI LASMSTQYGV FQLSGPLESL IRNQHDRGRS LTLEEGDAQI 180 LLELFVNMQE ENPKFFYAVD LNEEHRLRNV FWVDAKGMDD YTYFSDVVVF DTTYFSNKHG 240 ALAMGGRGPC VLLTDQNNAI KAAVSSVFPH TCHYFCLWHI LDKIPRQLQY LNLWHDTFMS 300 KFKKCIYKSW SEELFEKRWW KLVERFNLQE DQWLQLLYED RKRWVPTFMR DVCFSQLSAN 360 SRFEGPNSFF DKYVSPETSL RDFIGIYKSI LEDRYEEEAK ANFDAWHETP ELKSPSPFEK 420 QTSLVYTHEI FKKFQVEVLG AAACHLKKEK EDEQSKTFAV KDFDTSEDFV VEWNEQKSDI 480 YCSCHSFQYK GYLCRHAIVV LQMSGVFNIP FRYILQRWTN AATSRRCISE RLDEVQAKVR 540 RFNDLCRRAI VLGEEGSLSQ ESYNVAIGTI KEAFNRCASL NNSTESDLRP SSSATFAIQS 600 AEDMNQGTTT AMELVPCSVG SKSKRSHSGK ERESYEGNSN KKGKVPMEPE ALNIGAPGDF 660 HQMDIPGGLE YPTLYPRFLT TLLRGGDMSK RSVEMLGEML EEQS

Sequence ? help Back to Top

Protein Sequence Length: 704 aa Download sequence Send to blast

MESTTIIGNP IVEPQADTEF DSHEAAYEFY REYAXFVGFG TAKLSSRRSR ASKEFIDAKF  60
SCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRRQNGKWY IHSFVKEHNH ELLPAQAHFF  120
RSHRNVDPLK NDAKVRRRKI LASMSTQYGV FQLSGPLESL IRNQHDRGRS LTLEEGDAQI  180
LLELFVNMQE ENPKFFYAVD LNEEHRLRNV FWVDAKGMDD YTYFSDVVVF DTTYFSNKHG  240
ALAMGGRGPC VLLTDQNNAI KAAVSSVFPH TCHYFCLWHI LDKIPRQLQY LNLWHDTFMS  300
KFKKCIYKSW SEELFEKRWW KLVERFNLQE DQWLQLLYED RKRWVPTFMR DVCFSQLSAN  360
SRFEGPNSFF DKYVSPETSL RDFIGIYKSI LEDRYEEEAK ANFDAWHETP ELKSPSPFEK  420
QTSLVYTHEI FKKFQVEVLG AAACHLKKEK EDEQSKTFAV KDFDTSEDFV VEWNEQKSDI  480
YCSCHSFQYK GYLCRHAIVV LQMSGVFNIP FRYILQRWTN AATSRRCISE RLDEVQAKVR  540
RFNDLCRRAI VLGEEGSLSQ ESYNVAIGTI KEAFNRCASL NNSTESDLRP SSSATFAIQS  600
AEDMNQGTTT AMELVPCSVG SKSKRSHSGK ERESYEGNSN KKGKVPMEPE ALNIGAPGDF  660
HQMDIPGGLE YPTLYPRFLT TLLRGGDMSK RSVEMLGEML EEQS

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027126392.1	0.0	protein FAR1-RELATED SEQUENCE 4
Refseq	XP_027126393.1	0.0	protein FAR1-RELATED SEQUENCE 4
Refseq	XP_027169169.1	0.0	protein FAR1-RELATED SEQUENCE 4-like
Refseq	XP_027169170.1	0.0	protein FAR1-RELATED SEQUENCE 4-like
Refseq	XP_027169171.1	0.0	protein FAR1-RELATED SEQUENCE 4-like
Swissprot	Q6NQJ7	0.0	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	A0A1S4BQN8	0.0	A0A1S4BQN8_TOBAC; protein FAR1-RELATED SEQUENCE 4-like isoform X3
STRING	XP_009600660.1	0.0	(Nicotiana tomentosiformis)

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]