PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_2213_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

FAR1

Protein Properties

Length: 742aa MW: 85795.9 Da PI: 6.9596

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_2213_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.5	1.7e-26	28	114	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdg 74 +fY+eYA vGF + k +s++s+ ++e+++++f C ++g++++++++ ++r++ ++gCka+++vk++++g cra_locus_2213_iso_1_len_2811_ver_3 28 EFYREYAXFVGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRRQNG 97 6**************************************999877....9****************** PP FAR1 75 kwevtkleleHnHelap 91 kw+++++++eHnHel p cra_locus_2213_iso_1_len_2811_ver_3 98 KWYIHSFVKEHNHELLP 114 ************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.0E-24	28	114	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	9.0E-27	227	319	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.484	507	543	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.3E-9	513	541	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.5E-7	518	545	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 742 aa Download sequence Send to blast
MESTTIIGNP IVEPQADTEF DSHEAAYEFY REYAXFVGFG TAKLSSRRSR ASKEFIDAKF 60 SCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRRQNGKWY IHSFVKEHNH ELLPAQAHFF 120 RSHRNVDPLK NDAKVRRRKI LASMSTQYGV FQLSGPLESL IRNQHDRGRS LTLEEGDAQI 180 LLELFVNMQE ENPKFFYAVD LNEEHRLRNV FWVDAKGMDD YTYFSDVVVF DTTYFSNKYK 240 IPLAFFIGVN NHAQPILLGC ALIADDTVFT YAWLMQTWCL AMGGRGPCVL LTDQNNAIKA 300 AVSSVFPHTC HYFCLWHILD KIPRQLQYLN LWHDTFMSKF KKCIYKSWSE ELFEKRWWKL 360 VERFNLQEDQ WLQLLYEDRK RWVPTFMRDV CFSQLSANSR FEGPNSFFDK YVSPETSLRD 420 FIGIYKSILE DRYEEEAKAN FDAWHETPEL KSPSPFEKQT SLVYTHEIFK KFQVEVLGAA 480 ACHLKKEKED EQSKTFAVKD FDTSEDFVVE WNEQKSDIYC SCHSFQYKGY LCRHAIVVLQ 540 MSGVFNIPFR YILQRWTNAA TSRRCISERL DEVQAKVRRF NDLCRRAIVL GEEGSLSQES 600 YNVAIGTIKE AFNRCASLNN STESDLRPSS SATFAIQSAE DMNQGTTTAM ELVPCSVGSK 660 SKRSHSGKER ESYEGNSNKK GKVPMEPEAL NIGAPGDFHQ MDIPGGLEYP TLYPRFLTTL 720 LRGGDMSKRS VEMLGEMLEE QS

Sequence ? help Back to Top

Protein Sequence Length: 742 aa Download sequence Send to blast

MESTTIIGNP IVEPQADTEF DSHEAAYEFY REYAXFVGFG TAKLSSRRSR ASKEFIDAKF  60
SCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRRQNGKWY IHSFVKEHNH ELLPAQAHFF  120
RSHRNVDPLK NDAKVRRRKI LASMSTQYGV FQLSGPLESL IRNQHDRGRS LTLEEGDAQI  180
LLELFVNMQE ENPKFFYAVD LNEEHRLRNV FWVDAKGMDD YTYFSDVVVF DTTYFSNKYK  240
IPLAFFIGVN NHAQPILLGC ALIADDTVFT YAWLMQTWCL AMGGRGPCVL LTDQNNAIKA  300
AVSSVFPHTC HYFCLWHILD KIPRQLQYLN LWHDTFMSKF KKCIYKSWSE ELFEKRWWKL  360
VERFNLQEDQ WLQLLYEDRK RWVPTFMRDV CFSQLSANSR FEGPNSFFDK YVSPETSLRD  420
FIGIYKSILE DRYEEEAKAN FDAWHETPEL KSPSPFEKQT SLVYTHEIFK KFQVEVLGAA  480
ACHLKKEKED EQSKTFAVKD FDTSEDFVVE WNEQKSDIYC SCHSFQYKGY LCRHAIVVLQ  540
MSGVFNIPFR YILQRWTNAA TSRRCISERL DEVQAKVRRF NDLCRRAIVL GEEGSLSQES  600
YNVAIGTIKE AFNRCASLNN STESDLRPSS SATFAIQSAE DMNQGTTTAM ELVPCSVGSK  660
SKRSHSGKER ESYEGNSNKK GKVPMEPEAL NIGAPGDFHQ MDIPGGLEYP TLYPRFLTTL  720
LRGGDMSKRS VEMLGEMLEE QS

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027126392.1	0.0	protein FAR1-RELATED SEQUENCE 4
Refseq	XP_027126393.1	0.0	protein FAR1-RELATED SEQUENCE 4
Refseq	XP_027169169.1	0.0	protein FAR1-RELATED SEQUENCE 4-like
Refseq	XP_027169170.1	0.0	protein FAR1-RELATED SEQUENCE 4-like
Refseq	XP_027169171.1	0.0	protein FAR1-RELATED SEQUENCE 4-like
Swissprot	Q6NQJ7	0.0	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	A0A1S4BQN8	0.0	A0A1S4BQN8_TOBAC; protein FAR1-RELATED SEQUENCE 4-like isoform X3
STRING	XP_009600660.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA496	21	103

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]