PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_22026_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | HSF | ||||||||
Protein Properties | Length: 115aa MW: 14156.2 Da PI: 10.1097 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 24.7 | 6e-08 | 2 | 39 | 53 | 102 |
HHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 53 FvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkks 102 F+RQLn+Y + +k weF+h++F+kgk++ll +i+rkk cra_locus_22026_iso_1_len_365_ver_3 2 FIRQLNTYK-----TASK-------RWEFQHEKFQKGKRNLLVEIQRKKC 39 899999993.....3333.......4**********************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 5.98E-5 | 2 | 37 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 2.2E-6 | 2 | 37 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 9.8E-6 | 2 | 37 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 115 aa Download sequence Send to blast |
XFIRQLNTYK TASKRWEFQH EKFQKGKRNL LVEIQRKKCE PSAFPQYLKA SEEKTMDQED 60 RRRLKLMEEN KNLRKERSEL EMQIAHFKTL ELKLLDCLSH YMDTHDLHNK LRRLC |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027105264.1 | 3e-49 | heat stress transcription factor B-2a-like | ||||
Refseq | XP_027111776.1 | 3e-49 | heat stress transcription factor B-2a-like | ||||
Refseq | XP_027162879.1 | 3e-49 | heat stress transcription factor B-2a-like | ||||
TrEMBL | A0A068TTC0 | 2e-47 | A0A068TTC0_COFCA; Uncharacterized protein | ||||
STRING | XP_010108202.1 | 1e-46 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10707 | 18 | 23 |