PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_21868_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

SRS

Protein Properties

Length: 201aa MW: 22105.6 Da PI: 8.6053

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_21868_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	162	3.6e-50	1	133	18	153
DUF702 18 dCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstkl 91 dC++ RCRtCCksrgf+C+thv stWvp +krr r+ +++++ s+ s++ + +++++ + +++ + ++++ cra_locus_21868_iso_1_len_603_ver_3 1 DCSFLRCRTCCKSRGFHCQTHVNSTWVPLSKRRPRHLHQQQQISS---SSTINPPHQQQLQLPQEEPNPKRSRD 71 8*******************************95554443332...23344445555555667777777776 PP DUF702 92 ssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 + s +e +++P+e++ +avfrcvrvss+d+ ++laYqt+v+igGh+fkG+LydqG++ cra_locus_21868_iso_1_len_603_ver_3 72 FITPSLGLIEGNNFPAEIRFPAVFRCVRVSSMDNVVDQLAYQTSVNIGGHIFKGVLYDQGPA 133 67777788999***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01623	2.6E-17	1	32	IPR006510	Zinc finger, lateral root primordium type 1
Pfam	PF05142	2.0E-47	1	133	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01624	5.5E-24	85	132	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
DCSFLRCRTC CKSRGFHCQT HVNSTWVPLS KRRPRHLHQQ QQISSSSTIN PPHQQQLQLP 60 QEEPNPKRSR DFITPSLGLI EGNNFPAEIR FPAVFRCVRV SSMDNVVDQL AYQTSVNIGG 120 HIFKGVLYDQ GPAADTTQYI AGETSSSGGG GGGFLQQQPN LITTTTTNIT SAASPSSNYQ 180 PSPFSANFMP PAGTQFFQYP N

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027109649.1	2e-57	protein SHI RELATED SEQUENCE 1
TrEMBL	A0A068TLZ8	4e-56	A0A068TLZ8_COFCA; Uncharacterized protein
STRING	XP_009602229.1	1e-54	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4156	24	45