PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_21690_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 150aa    MW: 16377.9 Da    PI: 10.4397
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_21690_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.6e-1950100256
                                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                           y+GVr +  +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g+
  cra_locus_21690_iso_3_len_447_ver_3  50 TYRGVRKRN-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKGH 100
                                          69****887.**********843...6************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.0E-1450100IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-3250108IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-2250108IPR016177DNA-binding domain
SMARTSM003803.6E-3650113IPR001471AP2/ERF domain
PROSITE profilePS5103223.70950107IPR001471AP2/ERF domain
PRINTSPR003675.7E-115162IPR001471AP2/ERF domain
CDDcd000181.03E-3051109No hitNo description
PRINTSPR003675.7E-117389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
XSSTTSSSSF STNSNSRKGQ NGEIDLKKKK KKSNNNINGG GGEDDEKHPT YRGVRKRNWG  60
KWVSEIREPR KKSRIWLGTY PTAEMAARAH DVAALAIKGH SAFLNFPHLA HELPRPASTL  120
PKDIQAAAAK AAASITFSAE SRDGDDDDQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-20471081173Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027106538.15e-53ethylene-responsive transcription factor ERF038-like
SwissprotQ8LBQ72e-48ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A2K3NJH19e-52A0A2K3NJH1_TRIPR; Ethylene-responsive transcription factor erf034-like protein
TrEMBLV5RF181e-51V5RF18_COFAR; ERF transcription factor 04
STRINGXP_004510113.18e-52(Cicer arietinum)
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]