PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_21690_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | ERF | ||||||||
Protein Properties | Length: 236aa MW: 26121.7 Da PI: 4.9268 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.4 | 8.5e-19 | 50 | 100 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr + +g+Wv+eIr+p++ + r++lg++ tae+Aa+a++ a+++++g+ cra_locus_21690_iso_2_len_877_ver_3 50 TYRGVRKRN-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKGH 100 69****887.**********843...6***********************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.9E-13 | 50 | 100 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.0E-32 | 50 | 108 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-22 | 50 | 108 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.709 | 50 | 107 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.6E-36 | 50 | 113 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 51 | 62 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.69E-32 | 51 | 109 | No hit | No description |
PRINTS | PR00367 | 1.1E-10 | 73 | 89 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
XSSTTSSSSF STNSNSRKGQ NGEIDLKKKK KKSNNNINGG GGEDDEKHPT YRGVRKRNWG 60 KWVSEIREPR KKSRIWLGTY PTAEMAARAH DVAALAIKGH SAFLNFPHLA HELPRPASTL 120 PKDIQAAAAK AAASITFSAE SRDGDDDDQX REEEEDQPPI NRSELPNSHS SSDLSSENSQ 180 LESSTSNSNS NSPENDDDTF FNLPDLSIDV AGDHIDGYCF YDSGFRLEEP FLWDCY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-19 | 38 | 108 | 3 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00312 | DAP | Transfer from AT2G44940 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011089857.1 | 1e-73 | ethylene-responsive transcription factor ERF034 | ||||
Swissprot | Q8LBQ7 | 3e-56 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | A0A2G9GT81 | 2e-72 | A0A2G9GT81_9LAMI; Uncharacterized protein | ||||
STRING | XP_009613551.1 | 3e-68 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA212 | 24 | 225 |
Publications ? help Back to Top | |||
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