PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_2165_iso_10

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C2H2

Protein Properties

Length: 371aa MW: 39666.3 Da PI: 8.3077

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_2165_iso_10	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.8	0.0015	37	60	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 +kC+ C+k s+ ++ H H cra_locus_2165_iso_10_len_1991_ver_3 37 FKCHVCHKKLSTAGGMQIHVLQvH 60 89*****************87655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50808	11.78	8	67	IPR003656	Zinc finger, BED-type
SMART	SM00355	18	13	36	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	15	36	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.03	37	60	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	39	60	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006506	Biological Process	GPI anchor biosynthetic process
GO:0009846	Biological Process	pollen germination
GO:0009860	Biological Process	pollen tube growth
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding
GO:0017176	Molecular Function	phosphatidylinositol N-acetylglucosaminyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MGKKKKRANS SKVWCYYCDR EFEDEKILVQ HQKAKHFKCH VCHKKLSTAG GMQIHVLQVH 60 KETVNKVPNA KPGRESTDIE IYGMQGIPPD VLAAHYGEED DEAPSKAAKV DIPSSQIVGA 120 AVPGPLGMAY PPQSMRPIYN PAMQVAPAGW GVPSRPQSWY PQHPGVSVPP PPLGLPPQPL 180 FPVQSMRPPM PSTVPPGLQP PVPITPPGLP ASTAPVPVSQ PLFPVVPVSN IPAQSSAFSA 240 SVPPTSLPLS SPLEPKSSTD SYLASNTITG SYPASGIPAA TPVNSHSYAS GPNTGGPSIG 300 PPPVIANKAP VTQPANNEVY LVWDDEAMSM EERRMSLLKY QVHDETSQMS SIDAAIDRRI 360 SESRLAGRMA F

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MGKKKKRANS SKVWCYYCDR EFEDEKILVQ HQKAKHFKCH VCHKKLSTAG GMQIHVLQVH  60
KETVNKVPNA KPGRESTDIE IYGMQGIPPD VLAAHYGEED DEAPSKAAKV DIPSSQIVGA  120
AVPGPLGMAY PPQSMRPIYN PAMQVAPAGW GVPSRPQSWY PQHPGVSVPP PPLGLPPQPL  180
FPVQSMRPPM PSTVPPGLQP PVPITPPGLP ASTAPVPVSQ PLFPVVPVSN IPAQSSAFSA  240
SVPPTSLPLS SPLEPKSSTD SYLASNTITG SYPASGIPAA TPVNSHSYAS GPNTGGPSIG  300
PPPVIANKAP VTQPANNEVY LVWDDEAMSM EERRMSLLKY QVHDETSQMS SIDAAIDRRI  360
SESRLAGRMA F

Functional Description ? help Back to Top
Source	Description
UniProt	Sequence-specific DNA binding factor that recognizes the 5'-CCAAATTTTAAGTTT-3' sequence. Recruits the FRI-C complex to the FLC promoter. Required for FRI-mediated FLC activation, but has no effect on the expression of MAF1, MAF2, MAF3, MAF5, UFC and CO. Dispensable for the reactivation of FLC in early embryogenesis, but required to maintain high levels of FLC expression in later embryonic and vegetative development. {ECO:0000269\|PubMed:17079264, ECO:0000269\|PubMed:17138694, ECO:0000269\|PubMed:19121105, ECO:0000269\|PubMed:21282526}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by photoperiod or vernalization. {ECO:0000269\|PubMed:17079264, ECO:0000269\|PubMed:17138694}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011096842.1	0.0	protein SUPPRESSOR OF FRI 4 isoform X2
Swissprot	Q9C5G0	1e-154	SUF4_ARATH; Protein SUPPRESSOR OF FRI 4
TrEMBL	A0A2N9H273	0.0	A0A2N9H273_FAGSY; Uncharacterized protein
STRING	XP_009363258.1	0.0	(Pyrus x bretschneideri)

Publications ? help Back to Top
Ding L,Kim SY,Michaels SD FLOWERING LOCUS C EXPRESSOR family proteins regulate FLOWERING LOCUS C expression in both winter-annual and rapid-cycling Arabidopsis. Plant Physiol., 2013. 163(1): p. 243-52 [PMID:23899645] Resentini F, et al. SUPPRESSOR OF FRIGIDA (SUF4) Supports Gamete Fusion via Regulating Arabidopsis EC1 Gene Expression. Plant Physiol., 2017. 173(1): p. 155-166 [PMID:27920160]