PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | cra_locus_2165_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 208aa MW: 23286.9 Da PI: 8.7603 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.9 | 0.00071 | 37 | 60 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 +kC+ C+k s+ ++ H H cra_locus_2165_iso_1_len_1042_ver_3 37 FKCHVCHKKLSTAGGMQIHVLQvH 60 89*****************87655 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50808 | 11.78 | 8 | 67 | IPR003656 | Zinc finger, BED-type |
SuperFamily | SSF57667 | 9.86E-5 | 12 | 62 | No hit | No description |
SMART | SM00355 | 18 | 13 | 36 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 15 | 36 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.03 | 37 | 60 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 39 | 60 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006506 | Biological Process | GPI anchor biosynthetic process | ||||
GO:0009846 | Biological Process | pollen germination | ||||
GO:0009860 | Biological Process | pollen tube growth | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0017176 | Molecular Function | phosphatidylinositol N-acetylglucosaminyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 208 aa Download sequence Send to blast |
MGKKKKRANS SKVWCYYCDR EFEDEKILVQ HQKAKHFKCH VCHKKLSTAG GMQIHVLQVH 60 KETVNKVPNA KPGRESTDIE IYGMQGIPPD VLAAHYGEED DEAPSKAAKV DIPSSQIVGA 120 AVPGPLGMAY PPQPMPPMLH KIAYVNMGTR IRGSFPPSQP KWRKIAYGGI QPGFEDNHTD 180 DSFLEDMIMN ANVVKRDLPK VCICYPLY |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Sequence-specific DNA binding factor that recognizes the 5'-CCAAATTTTAAGTTT-3' sequence. Recruits the FRI-C complex to the FLC promoter. Required for FRI-mediated FLC activation, but has no effect on the expression of MAF1, MAF2, MAF3, MAF5, UFC and CO. Dispensable for the reactivation of FLC in early embryogenesis, but required to maintain high levels of FLC expression in later embryonic and vegetative development. {ECO:0000269|PubMed:17079264, ECO:0000269|PubMed:17138694, ECO:0000269|PubMed:19121105, ECO:0000269|PubMed:21282526}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Not regulated by photoperiod or vernalization. {ECO:0000269|PubMed:17079264, ECO:0000269|PubMed:17138694}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011031840.1 | 2e-82 | PREDICTED: protein SUPPRESSOR OF FRI 4-like isoform X3 | ||||
Swissprot | Q9C5G0 | 3e-70 | SUF4_ARATH; Protein SUPPRESSOR OF FRI 4 | ||||
TrEMBL | B9GZ07 | 2e-80 | B9GZ07_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s07180.1 | 6e-81 | (Populus trichocarpa) |
Publications ? help Back to Top | |||
---|---|---|---|
|