PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_21650_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB | ||||||||
Protein Properties | Length: 327aa MW: 37158.4 Da PI: 6.5804 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.1 | 7.3e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l+++++++G g+W+++++ g+ R++k+c++rw +yl cra_locus_21650_iso_1_len_1283_ver_3 14 KGLWSPEEDEKLYNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.7 | 3.7e-15 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++++E++l++++++ lG++ W+ Ia+ ++ gRt++++k++w++ cra_locus_21650_iso_1_len_1283_ver_3 67 RGMFSQQEEDLIIRLHEILGNR-WAQIAAQLP-GRTDNEIKNFWNS 110 788*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.7E-25 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.981 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.21E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.7E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.8E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.01E-10 | 17 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.177 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-25 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-14 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.14E-10 | 70 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MGRHSCCIKQ KLRKGLWSPE EDEKLYNYIT RFGVGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGMF SQQEEDLIIR LHEILGNRWA QIAAQLPGRT DNEIKNFWNS SLKKKLIKQG 120 IDPNTHQPII ENEAKEEKIC KENASLQISH SSSTSSGVIN TDFGSTGQQL QPVSNNNDNN 180 KQVFDPFFLL EFQANVDPCG YNSSFLNYNG SNLTTLDQKA RTETDFSDTQ MINSNMAEEN 240 AKAAAISSWD SSDNHKFDSV YNQYQLINGI KVEQHHHNHQ VMKPIISPWQ ENSLGDFSEY 300 PLATTTTSLS GEDLNGTNVL DHVFNHL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-28 | 12 | 116 | 5 | 108 | B-MYB |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027123937.1 | 1e-120 | transcription factor MYB86-like | ||||
Swissprot | Q8LPH6 | 3e-81 | MYB86_ARATH; Transcription factor MYB86 | ||||
TrEMBL | A0A068VIB7 | 1e-118 | A0A068VIB7_COFCA; Uncharacterized protein | ||||
STRING | POPTR_0015s09430.1 | 1e-113 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |