PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_21529_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

FAR1

Protein Properties

Length: 795aa MW: 91115.7 Da PI: 5.9918

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_21529_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	101	1.2e-31	86	177	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkek 72 fYn+YA++vGFs+r+s+s++s+++g i++r fvC keg+r+ ++k+ +++ +r+r+ tr+gCka+l vk ++ cra_locus_21529_iso_1_len_2596_ver_3 86 FYNSYARRVGFSTRVSSSRRSRKDGAIIQRSFVCAKEGFRNLNEKRtkDREIKRPRTITRVGCKASLSVKIQD 158 9*************************************998888545677889************** PP FAR1 73 dgkwevtkleleHnHelap 91 +gkw+v+++++eHnHel+p cra_locus_21529_iso_1_len_2596_ver_3 159 SGKWVVSNFVKEHNHELVP 177 ***************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.9E-30	86	177	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.6E-32	298	390	IPR018289	MULE transposase domain
Pfam	PF04434	1.5E-12	566	612	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.313	578	614	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.6E-10	589	616	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 795 aa Download sequence Send to blast
MENGVIEFDI GLGGSIGGGE DDPLDIEDHR HDHMDNDETI ADLSPTAASI SGRGYGLQES 60 YIPEGDLDLE PYEGMEFESE EAAKAFYNSY ARRVGFSTRV SSSRRSRKDG AIIQRSFVCA 120 KEGFRNLNEK RTKDREIKRP RTITRVGCKA SLSVKIQDSG KWVVSNFVKE HNHELVPPDQ 180 VHCLRSHRQI SGPAKTLIDT LQAAGMGPRR IMSALIKEYG GISKVGFTEV DCRNYMRNNR 240 QRSLEGDIQL LLDYLKQMQS ENPAFFYAVQ GDEEQYTGNV LWADPKAMAN YTYFGDTVTF 300 DTTYRSNRYR LPFAPFTGVN NHGQPVLFGC AFLINESEAS FVWLFKTWLE AMSGHPPVSI 360 TTDYDALIQS AVMQVFPETR HRFCKWHIFK KCQEKLSLVF LEHPNFEAEF HKCVDLTESI 420 EEFESCWFSL LDKHELRDYE WLQAIYGARS QWVPVYLRDT FFAEMSITQP SDSINSYFDG 480 YVNASTNLNQ FFKLYEKALE SRNEKEVKAD YETLNGSPIL MTPSPMEKQA SELYTRKLFM 540 RFQEELVGTL TFMASKADDD GEITTYQVAK FGEDHKAYYV RFNVLEMKAS CSCRMFEFSG 600 ILCRHILAVF RVTNVLTLPS HYILKRWTRN AKSCIALDEH VNDVFSSYLE SHTVRYNTLR 660 HEAFKFVDEG AESVETYTVA MAALEEAIEK VSKEMKNEGK ISTVSGRIRD DSKRNGIQAN 720 HSTQNNQGSF AQQLSEEERD KKIGELAREL DFANRRCEVY RANLLAVLKD IEDHKRQLSI 780 KVQNVKITMK DGFLG

Sequence ? help Back to Top

Protein Sequence Length: 795 aa Download sequence Send to blast

MENGVIEFDI GLGGSIGGGE DDPLDIEDHR HDHMDNDETI ADLSPTAASI SGRGYGLQES  60
YIPEGDLDLE PYEGMEFESE EAAKAFYNSY ARRVGFSTRV SSSRRSRKDG AIIQRSFVCA  120
KEGFRNLNEK RTKDREIKRP RTITRVGCKA SLSVKIQDSG KWVVSNFVKE HNHELVPPDQ  180
VHCLRSHRQI SGPAKTLIDT LQAAGMGPRR IMSALIKEYG GISKVGFTEV DCRNYMRNNR  240
QRSLEGDIQL LLDYLKQMQS ENPAFFYAVQ GDEEQYTGNV LWADPKAMAN YTYFGDTVTF  300
DTTYRSNRYR LPFAPFTGVN NHGQPVLFGC AFLINESEAS FVWLFKTWLE AMSGHPPVSI  360
TTDYDALIQS AVMQVFPETR HRFCKWHIFK KCQEKLSLVF LEHPNFEAEF HKCVDLTESI  420
EEFESCWFSL LDKHELRDYE WLQAIYGARS QWVPVYLRDT FFAEMSITQP SDSINSYFDG  480
YVNASTNLNQ FFKLYEKALE SRNEKEVKAD YETLNGSPIL MTPSPMEKQA SELYTRKLFM  540
RFQEELVGTL TFMASKADDD GEITTYQVAK FGEDHKAYYV RFNVLEMKAS CSCRMFEFSG  600
ILCRHILAVF RVTNVLTLPS HYILKRWTRN AKSCIALDEH VNDVFSSYLE SHTVRYNTLR  660
HEAFKFVDEG AESVETYTVA MAALEEAIEK VSKEMKNEGK ISTVSGRIRD DSKRNGIQAN  720
HSTQNNQGSF AQQLSEEERD KKIGELAREL DFANRRCEVY RANLLAVLKD IEDHKRQLSI  780
KVQNVKITMK DGFLG

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021636089.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_021636090.1	0.0	protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2C9UF08	0.0	A0A2C9UF08_MANES; Uncharacterized protein
STRING	EOX98949	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]