PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_21461_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | YABBY | ||||||||
Protein Properties | Length: 112aa MW: 12604.4 Da PI: 10.8058 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 135.9 | 4.9e-42 | 10 | 88 | 94 | 170 |
YABBY 94 tsvsseklsenedeevprvpp..virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPk 165 +++ss+++ ++ + +++ p v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ cra_locus_21461_iso_2_len_333_ver_3 10 SNNSSSRMAIQQCSNPSKPEPriVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 83 333344444444444444444459************************************************** PP YABBY 166 ihfgl 170 ihfgl cra_locus_21461_iso_2_len_333_ver_3 84 IHFGL 88 ***97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.6E-40 | 10 | 88 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 3.93E-9 | 24 | 81 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 4.9E-5 | 36 | 82 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 112 aa Download sequence Send to blast |
XLGSSSKWSS NNSSSRMAIQ QCSNPSKPEP RIVNRPPEKR QRVPSAYNQF IKEEIQRIKA 60 NNPDISHREA FSTAAKNWAH FPHIHFGLML ESNNQAKLAC GSRKLSNAXS CX |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006358281.1 | 2e-51 | PREDICTED: axial regulator YABBY 5-like | ||||
Refseq | XP_016579960.1 | 3e-51 | PREDICTED: axial regulator YABBY 5-like isoform X1 | ||||
Refseq | XP_016579962.1 | 2e-51 | PREDICTED: axial regulator YABBY 5-like isoform X3 | ||||
Swissprot | Q8GW46 | 1e-44 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A0V0GXA6 | 1e-50 | A0A0V0GXA6_SOLCH; Putative axial regulator YABBY 5-like | ||||
STRING | PGSC0003DMT400079392 | 1e-50 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 |
Publications ? help Back to Top | |||
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