PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2141_iso_7
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 563aa    MW: 65979.4 Da    PI: 9.5584
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2141_iso_7genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.94e-092754126
                                         --S---SGGGGTS..--TTTTT-SS-SS CS
                              zf-CCCH  1 yktelCrffartG..tCkyGdrCkFaHg 26
                                         +k ++C  ++++   +C++G+ C+F+H+
  cra_locus_2141_iso_7_len_2489_ver_3 27 WKVAICGEYMKSNlkICSRGSACNFIHC 54
                                         899************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR018482.5E-8832IPR009145U2 auxiliary factor small subunit
PROSITE profilePS5010310.8222656IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-72754IPR000571Zinc finger, CCCH-type
PRINTSPR018482.5E-84658IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0000166Molecular Functionnucleotide binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MFAYHSISGR YFAGKQVNCE FVAVTRWKVA ICGEYMKSNL KICSRGSACN FIHCFRNPGG  60
DYEWADWDKP PPRFWVEKMA ALFGYSDQSE YDKKIETPGQ FRDCSKRLMR DRDRYYYRRS  120
QSKEIESSNR SLSDAYEEDN VRRINIQHTN DDKRKLEVLD GRESREETWS RHLRQPSKKR  180
FYDGDSDRDL LNRNRDADMY QSSTRKRSRY HQKELNDTQE ACSIGCRNDA VLETDTSNRR  240
KERYMREEHR KKSSRQHEDS EHKKISDSTD SRKAQSSEDW ESLSCNDHWD KRSYDSDSTC  300
ELSEGITGRC HNYGRKPLRH LNEASRLPDN YIVSHKVSSK ESRGKKSEQF NSERCPVRKR  360
SSSGRKYHLS RKNEVGSSDE QKLSDEEHAQ KISSQNDRRR SKSCDSDISY GSSQMGPVEF  420
KEDLPKKSKT KSVSDEKFGY DHTNQKNQHH DDSRESLNED IDRRGRWEPA QVDSEKQQKH  480
RRKSIGKNDK HNIGRASYDR SSDEYSKGSM PGGSNKLSHR KAETSSKEMD SDAKLEGRGE  540
DGKICGRKYR SHGSKRRHKE IKP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1238251RRKERYMREEHRKK