PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2141_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 656aa    MW: 76836.6 Da    PI: 8.8733
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2141_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.74.8e-09120147126
                                          --S---SGGGGTS..--TTTTT-SS-SS CS
                              zf-CCCH   1 yktelCrffartG..tCkyGdrCkFaHg 26 
                                          +k ++C  ++++   +C++G+ C+F+H+
  cra_locus_2141_iso_4_len_2598_ver_3 120 WKVAICGEYMKSNlkICSRGSACNFIHC 147
                                          899************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010211.16229117IPR000504RNA recognition motif domain
SMARTSM003600.002230113IPR000504RNA recognition motif domain
Gene3DG3DSA:3.30.70.3301.7E-1940115IPR012677Nucleotide-binding alpha-beta plait domain
SMARTSM003611.5E-445113IPR003954RNA recognition motif domain, eukaryote
PRINTSPR018487.9E-214661IPR009145U2 auxiliary factor small subunit
SuperFamilySSF549281.75E-1547116IPR012677Nucleotide-binding alpha-beta plait domain
PRINTSPR018487.9E-217496IPR009145U2 auxiliary factor small subunit
PRINTSPR018487.9E-21101125IPR009145U2 auxiliary factor small subunit
PROSITE profilePS5010310.822119149IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-7120147IPR000571Zinc finger, CCCH-type
PRINTSPR018487.9E-21139151IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0000166Molecular Functionnucleotide binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MTEVLGPGLA WLEFKDFHSV SCTSLNNIST ITIHLIPFFY TEEEVEHSFE EFYEDVHTEF  60
LKFGEIMNFK VCRNGSHHLR GNVYVHYKSL ESAMFAYHSI SGRYFAGKQV NCEFVAVTRW  120
KVAICGEYMK SNLKICSRGS ACNFIHCFRN PGGDYEWADW DKPPPRFWVE KMAALFGYSD  180
QSEYDKKIET PGQFRDCSKR LMRDRDRYYY RRSQSKEIES SNRSLSDAYE EDNVRRINIQ  240
HTNDDKRKLE VLDGRESREE TWSRHLRQPS KKRFYDGDSD RDLLNRNRDA DMYQSSTRKR  300
SRYHQKELND TQEACSIGCR NDAVLETDTS NRRKERYMRE EHRKKSSRQH EDSEHKKISD  360
STDSRKAQSS EDWESLSCND HWDKRSYDSD STCELSEGIT GRCHNYGRKP LRHLNEASRL  420
PDNYIVSHKV SSKESRGKKS EQFNSERCPV RKRSSSGRKY HLSRKNEVGS SDEQKLSDEE  480
HAQKISSQND RRRSKSCDSD ISYGSSQMGP VEFKEDLPKK SKTKSVSDEK FGYDHTNQKN  540
QHHDDSRESL NEDIDRRGRW EPAQVDSEKQ QKHRRKSIGK NDKHNIGRAS YDRSSDEYSK  600
GSMPGGSNKL SHRKAETSSK EMDSDAKLEG RGEDGKICGR KYRSHGSKRR HKEIKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yh8_A2e-164014664167Splicing factor U2AF 23 kDa subunit
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1331344RRKERYMREEHRKK