PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2107_iso_5
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bZIP
Protein Properties Length: 328aa    MW: 36361.3 Da    PI: 6.0549
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2107_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.12.1e-09194236446
                                          XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                               bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 
                                           k+ +r ++NR AA rsR+RKk +++ Le k+   eae ++L 
  cra_locus_2107_iso_5_len_1523_ver_3 194 AKKRKRQMRNRDAAVRSRERKKIYVKDLEMKSRYYEAECRKLE 236
                                          799*****************************99999988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003380.0062191255IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.255193250IPR004827Basic-leucine zipper domain
PfamPF077162.8E-7194237IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.25E-10195250No hitNo description
Gene3DG3DSA:1.20.5.1702.8E-10195253No hitNo description
CDDcd147047.87E-17196247No hitNo description
PROSITE patternPS000360198213IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0030968Biological Processendoplasmic reticulum unfolded protein response
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
XTHNRSRSPA QFPMAFPVXN RRREDDGPSQ LSRVYGLFII CPSSPCSMTD FTNLGENDLL  60
EFDGLFCDFV PDNLDSLDVD RSSSGVNSDH NSCGSDGVAS FSIVEIENFL LNDDFQPLTD  120
RDADAFLSDF LVDSPPTIAT GSDTSASPSP SPDVEYSNDK DCSPSDLEEK GGNQLHQQVE  180
NNNVQNDNDN DPLAKKRKRQ MRNRDAAVRS RERKKIYVKD LEMKSRYYEA ECRKLEWMLQ  240
CARAENHALQ IALHTNHQAF GASKTKQESA XALVGIPAVG FPALVHGNHR PSHSAAAQTV  300
AAGNPRSSTT GKRRRRKSEK SDLQKDGK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195214KRKRQMRNRDAAVRSRERKK
2311316KRRRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00019PBMTransfer from AT1G42990Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G9GK284e-44A0A2G9GK28_9LAMI; Uncharacterized protein
STRINGMigut.N02994.1.p8e-40(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA71012128