PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_2107_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bZIP

Protein Properties

Length: 325aa MW: 35865 Da PI: 4.7436

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_2107_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	29.5	1.6e-09	194	225	4	35
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekv 35 k+ +r ++NR AA rsR+RKk +++ Le k+ cra_locus_2107_iso_3_len_1516_ver_3 194 AKKRKRQMRNRDAAVRSRERKKIYVKDLEMKS 225 799**************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50217	8.749	193	236	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	8.6E-8	194	235	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.5E-8	195	233	No hit	No description
SuperFamily	SSF57959	1.05E-8	195	235	No hit	No description
CDD	cd14704	8.83E-14	196	238	No hit	No description
PROSITE pattern	PS00036	0	198	213	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0030968	Biological Process	endoplasmic reticulum unfolded protein response
GO:0005634	Cellular Component	nucleus
GO:0005789	Cellular Component	endoplasmic reticulum membrane
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
XTHNRSRSPA QFPMAFPVXN RRREDDGPSQ LSRVYGLFII CPSSPCSMTD FTNLGENDLL 60 EFDGLFCDFV PDNLDSLDVD RSSSGVNSDH NSCGSDGVAS FSIVEIENFL LNDDFQPLTD 120 RDADAFLSDF LVDSPPTIAT GSDTSASPSP SPDVEYSNDK DCSPSDLEEK GGNQLHQQVE 180 NNNVQNDNDN DPLAKKRKRQ MRNRDAAVRS RERKKIYVKD LEMKSRYYEA DCSILEWMTV 240 DAPVTITNCL AYESSGLWCF QDQAGVCCAL VGIPAVGFPA LVHGNHRPSH SAAAQTVAAG 300 NPRSSTTGKR RRRKSEKSDL QKDGK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	195	214	KRKRQMRNRDAAVRSRERKK
2	308	313	KRRRRK

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00019	PBM	Transfer from AT1G42990	Download