PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | cra_locus_20997_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 431aa MW: 48640.7 Da PI: 6.326 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 30.2 | 7.8e-10 | 358 | 395 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LA+++gLt++qV++WF N R + cra_locus_20997_iso_1_len_1526_ver_3 358 FEHflHPYPNDSEKLMLASQTGLTKNQVSNWFINARVR 395 554459******************************88 PP | |||||||
2 | BELL | 97.2 | 1.4e-31 | 221 | 291 | 2 | 72 |
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 ++el k kL+ lleeV++rY+qy++ ++ ++ssFe +aglg+ k+Yt+lAl+a+SrhF +Lkdai +qi cra_locus_20997_iso_1_len_1526_ver_3 221 KHELWTKLLKLIALLEEVERRYEQYYNHMEELVSSFELIAGLGTGKSYTALALQAMSRHFCNLKDAILSQI 291 689999***************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.3E-22 | 154 | 289 | IPR006563 | POX domain |
Pfam | PF07526 | 7.6E-32 | 164 | 287 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.017 | 336 | 399 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.70E-11 | 339 | 400 | No hit | No description |
SMART | SM00389 | 1.1E-9 | 339 | 403 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-27 | 344 | 405 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.84E-18 | 345 | 406 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 4.8E-17 | 356 | 395 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 431 aa Download sequence Send to blast |
MVSEDSPANP NSSILHQFNI SNTINANENQ YGQHFDAYAT DINGHCGYHS LGSMPGLQSL 60 HAPQMTDESD LGHRHLMDLL GTSNEGNYQT QRLSLTLVPP PVQERQRSLN QNLINPAGYM 120 ISGENARDHQ CMNSNYSFGG SSSPTRSSST SYGTEFLAVT IGNLKPAQTL LDEMVKISSK 180 TIDLSNEKYV RKLSRNSKRG SLKLRSELTL EFPNDDVCSD KHELWTKLLK LIALLEEVER 240 RYEQYYNHME ELVSSFELIA GLGTGKSYTA LALQAMSRHF CNLKDAILSQ IVGLKQKMSP 300 DMPKISAGIS QLSLFDREMR QNRMSLQQLG LIQSSRQAWR PIRGLPETSV AILRSWLFEH 360 FLHPYPNDSE KLMLASQTGL TKNQVSNWFI NARVRLWKPM IEEMYKEEFA DSSLESNPSF 420 TQEGFADSAE D |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 3e-16 | 345 | 403 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 3e-16 | 345 | 403 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027149739.1 | 0.0 | BEL1-like homeodomain protein 11 isoform X2 | ||||
Swissprot | Q1PFD1 | 3e-91 | BLH11_ARATH; BEL1-like homeodomain protein 11 | ||||
TrEMBL | A0A068UG59 | 0.0 | A0A068UG59_COFCA; Uncharacterized protein | ||||
STRING | VIT_18s0001g13130.t01 | 1e-171 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8602 | 22 | 28 |