PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_20943_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MIKC_MADS
Protein Properties Length: 206aa    MW: 23667.7 Da    PI: 8.9761
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_20943_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.41.2e-25958150
                                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                                         k+ien   rqvtf+kRr+g+lKKA+ELSvLCdae+ ++ifs +gklye +
  cra_locus_20943_iso_1_len_929_ver_3  9 KKIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLVIFSAHGKLYELA 58
                                         68*********************************************965 PP
2K-box58.33.3e-208617612100
                                K-box  12 akaeslqqelakLkkeienLqreqRhllGe..dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 
                                          + ++  ++e++kLk+eie Lq+ ++ + G   + +++sl eL  Le++Le  + +iRs K+++++++i+ l++k
  cra_locus_20943_iso_1_len_929_ver_3  86 QLQQDPREEISKLKQEIEVLQKGLKYMSGGvaGHGTMSLDELDMLEKHLEIWIYHIRSAKMDIMFQEIQLLKNK 159
                                          55677899***************9999996226689************************************** PP

                                K-box  84 ekelqeenkaLrkklee 100
                                          e  l+ +nk+L++k++e
  cra_locus_20943_iso_1_len_929_ver_3 160 EGILKAANKYLQEKIDE 176
                                          **************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.5E-36160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.997161IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.15E-28174IPR002100Transcription factor, MADS-box
CDDcd002652.75E-40278No hitNo description
PRINTSPR004043.3E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.8E-231056IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.65688180IPR002487Transcription factor, K-box
PfamPF014864.4E-2188174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MARGKIQMKK IENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIGLVIFSA HGKLYELATK  60
GTMQGLMEKY MKTTRGAAPD EQPPDQLQQD PREEISKLKQ EIEVLQKGLK YMSGGVAGHG  120
TMSLDELDML EKHLEIWIYH IRSAKMDIMF QEIQLLKNKE GILKAANKYL QEKIDEQYRI  180
TDMVPMMTTT NIPYGPLTIH NEIFQF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A6e-16185181MEF2 CHIMERA
6byy_B6e-16185181MEF2 CHIMERA
6byy_C6e-16185181MEF2 CHIMERA
6byy_D6e-16185181MEF2 CHIMERA
6bz1_A6e-16187183MEF2 CHIMERA
6bz1_B6e-16187183MEF2 CHIMERA
6bz1_C6e-16187183MEF2 CHIMERA
6bz1_D6e-16187183MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that regulates root development by controlling cell proliferation in root meristem. May mediate responses to auxin in the root. May act as promoter of the flowering transition through up-regulation of SOC, FT and LFY. {ECO:0000269|PubMed:18203871}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin in root phloem. {ECO:0000269|PubMed:18203871}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027091062.11e-119agamous-like MADS-box protein AGL12
RefseqXP_027148112.11e-119agamous-like MADS-box protein AGL12
SwissprotQ388416e-79AGL12_ARATH; Agamous-like MADS-box protein AGL12
TrEMBLA0A3Q7IV001e-105A0A3Q7IV00_SOLLC; Uncharacterized protein
STRINGSolyc11g032100.1.11e-105(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA98102024
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Pacheco-Escobedo MA, et al.
    Longitudinal zonation pattern in Arabidopsis root tip defined by a multiple structural change algorithm.
    Ann. Bot., 2018.
    [PMID:27358290]
  3. García-Cruz KV, et al.
    The MADS-box XAANTAL1 increases proliferation at the Arabidopsis root stem-cell niche and participates in transition to differentiation by regulating cell-cycle components.
    Ann. Bot., 2018.
    [PMID:27474508]