PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_2093_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | G2-like | ||||||||
Protein Properties | Length: 288aa MW: 33002.4 Da PI: 9.8911 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 93.7 | 1.4e-29 | 60 | 114 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rl+Wt+eLH+ F +av+qLGG+++AtPk il++m++ gLt+ hvkSHLQkYR+ cra_locus_2093_iso_4_len_1109_ver_3 60 KERLKWTQELHSLFEKAVNQLGGPDRATPKGILKAMGISGLTIFHVKSHLQKYRM 114 68****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.567 | 57 | 117 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-27 | 59 | 115 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.51E-16 | 59 | 114 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.3E-23 | 60 | 115 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.6E-9 | 62 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 6.1E-18 | 147 | 190 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0042393 | Molecular Function | histone binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
XSTQLNSTQM PIAYLTFSLQ QVYMCCSHLQ KKLPQIFHST GRVRRSRGCS MGSSRSDGSK 60 ERLKWTQELH SLFEKAVNQL GGPDRATPKG ILKAMGISGL TIFHVKSHLQ KYRMSKFIPE 120 SPHRGSRFER RSISEMLPNF SATSGAQLNE ALQMQLEVQR RLSDQFEVQR SLKMKIEAQG 180 RFLERIAEEC KNRSANAKPS KPYSPVSLPS LCEESDSEID RHEIRCTEEF RAPKRIRIED 240 DFMQQKYNNH NMLLQKGLNS PCWANDIGFP WNFAAQSPLL PALYDSLN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-20 | 60 | 117 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-20 | 60 | 117 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 2e-20 | 60 | 117 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-20 | 60 | 117 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-20 | 60 | 117 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-20 | 60 | 117 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-20 | 60 | 117 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-20 | 60 | 117 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-20 | 60 | 117 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-20 | 60 | 117 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-20 | 60 | 117 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-20 | 60 | 117 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027069043.1 | 1e-137 | myb family transcription factor PHL7-like | ||||
Swissprot | Q9SJW0 | 5e-53 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A068UDA6 | 1e-136 | A0A068UDA6_COFCA; Uncharacterized protein | ||||
STRING | XP_006481047.1 | 2e-98 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10101 | 20 | 26 |