PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_20822_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB | ||||||||
Protein Properties | Length: 253aa MW: 28562.7 Da PI: 8.2113 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.9 | 5.4e-14 | 1 | 48 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 g+W++eEd +l+ ++++G+g +W + +++ g++R++k+c++rw++yl cra_locus_20822_iso_1_len_758_ver_3 1 GPWSPEEDAKLKGFIEKFGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 48 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 38.6 | 2.4e-12 | 55 | 97 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ eEd ++ + + G++ W+ Ia+ ++ gRt++++k++w++ cra_locus_20822_iso_1_len_758_ver_3 55 GEFSDEEDRIICTLYASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 97 789******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.88E-25 | 1 | 95 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.779 | 1 | 48 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-6 | 1 | 50 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-23 | 1 | 55 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.3E-13 | 1 | 48 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.35E-8 | 2 | 48 | No hit | No description |
PROSITE profile | PS51294 | 22.418 | 49 | 103 | IPR017930 | Myb domain |
SMART | SM00717 | 3.5E-12 | 53 | 101 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-11 | 55 | 97 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.7E-24 | 56 | 103 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.17E-9 | 56 | 99 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
GPWSPEEDAK LKGFIEKFGT GGNWIALPQK AGLKRCGKSC RLRWLNYLRP NIKHGEFSDE 60 EDRIICTLYA SIGSRWSIIA AQLPGRTDND IKNYWNTKLK KKLMGFINPL DQRIKLPHHH 120 QYPFSNSSSS NAIQYFTTSS AKSLSTTGLE PFSLDQPNML LFNNLDNFNP MQLYYPSGKD 180 NMLMFGGTEA SCSNSSDGSC SQISYGRDQI KQEPPAINGL QGYNIYDHHH HHQENQKFVL 240 DYGNDNGGGG TWX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-25 | 1 | 103 | 8 | 108 | B-MYB |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027106285.1 | 9e-96 | transcription factor RAX2-like | ||||
Swissprot | Q9FKL2 | 1e-64 | MYB36_ARATH; Transcription factor MYB36 | ||||
TrEMBL | A0A068UFS8 | 3e-94 | A0A068UFS8_COFCA; Uncharacterized protein | ||||
STRING | POPTR_0009s01270.1 | 9e-93 | (Populus trichocarpa) |
Publications ? help Back to Top | |||
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