PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_20813_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family NF-YC
Protein Properties Length: 116aa    MW: 13625.1 Da    PI: 4.7332
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_20813_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC72.65.8e-23411151285
                                NF-YC  12 katdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavt 84 
                                          +a+ ++ +  +Pl+ri+ki+k++e+v++is +a +l+ kace++++elt+++w   ee++  tl++ di  a++
  cra_locus_20813_iso_1_len_347_ver_3  41 NASYIRsEYPFPLTRIRKIMKSNEKVERISGDAVILIGKACEFLVMELTFQAWFYQEETRFPTLQHWDIGRAIN 114
                                          44444435679***********************************************************9997 PP

                                NF-YC  85 r 85 
                                          +
  cra_locus_20813_iso_1_len_347_ver_3 115 N 115
                                          6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.85E-1546116IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.2E-1849113IPR009072Histone-fold
PfamPF008082.5E-1251112IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
XVPSFTACEN QNEDDQHSQF ESFLGENMLA LLKEQRTEIQ NASYIRSEYP FPLTRIRKIM  60
KSNEKVERIS GDAVILIGKA CEFLVMELTF QAWFYQEETR FPTLQHWDIG RAINNN