PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_20632_iso_2
Common Nameorca3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 202aa    MW: 22223.1 Da    PI: 5.8933
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_20632_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.73.8e-2098149256
                                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                          +ykGVr+++ +g+++AeIrdp++ g   r++lg++ t+e+Aa a++aa+ +++g+
  cra_locus_20632_iso_2_len_765_ver_3  98 RYKGVRRRP-WGKFAAEIRDPKKKG--SRIWLGTYETPEDAALAYDAAAFNMRGA 149
                                          7********.**********96643..*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.88E-2398157IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-3298157IPR001471AP2/ERF domain
CDDcd000182.18E-1998158No hitNo description
SMARTSM003802.5E-3798162IPR001471AP2/ERF domain
PROSITE profilePS5103223.9698156IPR001471AP2/ERF domain
PfamPF008471.7E-1498148IPR001471AP2/ERF domain
PRINTSPR003678.8E-1099110IPR001471AP2/ERF domain
PRINTSPR003678.8E-10122138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
XEEIISVSDR FLLSLIEEHL LSDNSDDSSS ELTSTEENWE EIFADFLNWS GSEIQKRGSP  60
SSESCQSNSM AESCQEDSVV GTPPEAAAGG GCSKDWNRYK GVRRRPWGKF AAEIRDPKKK  120
GSRIWLGTYE TPEDAALAYD AAAFNMRGAK ARLNFPHLIG SNISGPVRVN PRKRFPAEPS  180
TTSSSSSSSS SENSGGRKKR RY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-2899161668ATERF1
3gcc_A7e-2899161668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027157713.12e-49ethylene-responsive transcription factor 2-like
SwissprotQ8L9K18e-41ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLQ9LDB61e-144Q9LDB6_CATRO; AP2-domain DNA-binding protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Publications ? help Back to Top
  1. van der Fits L,Memelink J
    ORCA3, a jasmonate-responsive transcriptional regulator of plant primary and secondary metabolism.
    Science, 2000. 289(5477): p. 295-7
    [PMID:10894776]
  2. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]