PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_20557_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 241aa MW: 26914.4 Da PI: 9.2161 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 75.5 | 4.1e-24 | 9 | 58 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien nrqvtfskRr+g+lKKA+EL +LC aevaviifsstgk ye++s cra_locus_20557_iso_1_len_775_ver_3 9 KKIENINNRQVTFSKRRAGLLKKAKELAILC-AEVAVIIFSSTGKPYEFAS 58 68*****************************.7****************86 PP | |||||||
2 | K-box | 67.9 | 3.5e-23 | 83 | 174 | 9 | 100 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqk 82 +++a++ ++q +++ Lk+e+ +Lq qR+++G++L+sLs+keLq+Le+qL++++ +++++K+++lleq+e++ cra_locus_20557_iso_1_len_775_ver_3 83 NATANQHESQPHVNALKSEVAKLQLMQRQMMGKELGSLSFKELQKLEHQLNEAILTVKDRKEQVLLEQLEKSIL 156 56778889999*************************************************************** PP K-box 83 kekelqeenkaLrkklee 100 +e+++ en+aLr+++ee cra_locus_20557_iso_1_len_775_ver_3 157 QEQKTLLENEALREQIEE 174 ***************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.0E-37 | 1 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 28.02 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.84E-29 | 2 | 82 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.57E-40 | 2 | 76 | No hit | No description |
PRINTS | PR00404 | 6.7E-16 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.3E-23 | 10 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.7E-16 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.3E-17 | 87 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.935 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0048577 | Biological Process | negative regulation of short-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MGRGKIEIKK IENINNRQVT FSKRRAGLLK KAKELAILCA EVAVIIFSST GKPYEFASSR 60 MEQILHRYNS NSQASKLILT DENATANQHE SQPHVNALKS EVAKLQLMQR QMMGKELGSL 120 SFKELQKLEH QLNEAILTVK DRKEQVLLEQ LEKSILQEQK TLLENEALRE QIEELKGLGQ 180 SNGVGIGRKS SGGSWSTVCD CSRSDKDGNS DTSLRLGLSV DICNKRKVPK VEANTNDSES 240 X |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 8e-19 | 1 | 68 | 1 | 69 | MEF2C |
5f28_B | 8e-19 | 1 | 68 | 1 | 69 | MEF2C |
5f28_C | 8e-19 | 1 | 68 | 1 | 69 | MEF2C |
5f28_D | 8e-19 | 1 | 68 | 1 | 69 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Prevents premature flowering. Downstream regulator of a subset of the MIKC* MADS-controlled genes required during pollen maturation. {ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18034896, ECO:0000269|PubMed:18799658}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027069012.1 | 1e-118 | MADS-box transcription factor 23-like isoform X1 | ||||
Refseq | XP_027073038.1 | 1e-117 | MADS-box transcription factor 23-like isoform X1 | ||||
Swissprot | Q9M2K8 | 9e-57 | AGL18_ARATH; Agamous-like MADS-box protein AGL18 | ||||
TrEMBL | A0A068V010 | 1e-113 | A0A068V010_COFCA; Uncharacterized protein | ||||
STRING | XP_009758657.1 | 6e-80 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8775 | 22 | 26 |