PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_20485_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

HSF

Protein Properties

Length: 354aa MW: 39604.2 Da PI: 5.5242

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_20485_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	112	4e-35	10	102	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks 74 F++k+y++++d++++ li w +++n+fvv+d+ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++ cra_locus_20485_iso_2_len_1335_ver_3 10 FVMKTYQMVNDPSTDGLIAWGKENNNFVVIDPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVDPDR----- 77 9**************************************************************999..... PP XTTSEEEEESXXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 75 kekiweFkhksFkkgkkellekikrkkse 103 w F++++F +g+++ll++i r+k++ cra_locus_20485_iso_2_len_1335_ver_3 78 ----WAFANEWFLRGQTHLLKNIVRRKHN 102 ....*******************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	3.5E-52	6	99	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	8.9E-37	7	99	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	1.09E-33	7	99	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	1.5E-18	10	33	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.6E-29	10	99	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.5E-18	48	60	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	49	73	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.5E-18	61	73	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MEETSVVAPF VMKTYQMVND PSTDGLIAWG KENNNFVVID PLDFSQRILP AYFKHNNFSS 60 FVRQLNTYGF RKVDPDRWAF ANEWFLRGQT HLLKNIVRRK HNSRNNYAYH KYEDEEDDQE 120 LLMELDKLKQ EQRDLDQQLA KMNKRLEATE RRPQQMMAFL CKVVEDPEIL PRMMMEKERT 180 KRLNFGTEEK RRRLMISSVS SPPSSSGMAM TSSSVKSEEE EDAATLGAIS SSSEINFDVD 240 NFCQSSPSPE TRSGAWFSQR QKSISRPAIS QEQPYGTATA TANFYNNISS SLSPVSSIGS 300 GSFAVAPRGG NFAVYDNTYS GESGYLGGGG GGMVVGEGAA SPPPYPFSLL GGGF

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MEETSVVAPF VMKTYQMVND PSTDGLIAWG KENNNFVVID PLDFSQRILP AYFKHNNFSS  60
FVRQLNTYGF RKVDPDRWAF ANEWFLRGQT HLLKNIVRRK HNSRNNYAYH KYEDEEDDQE  120
LLMELDKLKQ EQRDLDQQLA KMNKRLEATE RRPQQMMAFL CKVVEDPEIL PRMMMEKERT  180
KRLNFGTEEK RRRLMISSVS SPPSSSGMAM TSSSVKSEEE EDAATLGAIS SSSEINFDVD  240
NFCQSSPSPE TRSGAWFSQR QKSISRPAIS QEQPYGTATA TANFYNNISS SLSPVSSIGS  300
GSFAVAPRGG NFAVYDNTYS GESGYLGGGG GGMVVGEGAA SPPPYPFSLL GGGF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hdg_A	6e-24	7	99	7	110	Heat shock factor protein 1
5hdn_A	6e-24	7	99	7	110	Heat shock factor protein 1
5hdn_B	6e-24	7	99	7	110	Heat shock factor protein 1
5hdn_C	6e-24	7	99	7	110	Heat shock factor protein 1
5hdn_D	6e-24	7	99	7	110	Heat shock factor protein 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	189	193	KRRRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00379	DAP	Transfer from AT3G24520	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027176495.1	1e-134	heat stress transcription factor C-1
Swissprot	Q9LV52	5e-91	HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBL	A0A068U4V7	1e-130	A0A068U4V7_COFCA; Uncharacterized protein
STRING	XP_009770587.1	1e-127	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6832	23	33

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Guan Q,Yue X,Zeng H,Zhu J The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis. Plant Cell, 2014. 26(1): p. 438-53 [PMID:24415771]